The RAD51 paralogs XRCC3 and RAD51C have been implicated in homologous recombination (HR) and DNA damage responses. However, the molecular mechanism(s) by which these paralogs regulate HR and DNA damage signaling remains obscure. Here, we show that an SQ motif serine 225 in XRCC3 is phosphorylated by ATR kinase in an ATM signaling pathway. We find that RAD51C but not XRCC2 is essential for XRCC3 phosphorylation, and this modification follows end resection and is specific to S and G 2 phases. XRCC3 phosphorylation is required for chromatin loading of RAD51 and HR-mediated repair of double-strand breaks (DSBs). Notably, in response to DSBs, XRCC3 participates in the intra-S-phase checkpoint following its phosphorylation and in the G 2 /M checkpoint independently of its phosphorylation. Strikingly, we find that XRCC3 distinctly regulates recovery of stalled and collapsed replication forks such that phosphorylation is required for the HR-mediated recovery of collapsed replication forks but is dispensable for the restart of stalled replication forks. Together, these findings suggest that XRCC3 is a new player in the ATM/ATR-induced DNA damage responses to control checkpoint and HR-mediated repair.T he genome of every living organism is susceptible to various types of DNA damage. Cells have evolved with DNA damage surveillance mechanisms to activate cell cycle checkpoints and DNA repair processes to preserve the integrity of the genome (1-6). The DNA damage response (DDR) pathways are primarily regulated by ataxia telangiectasia mutated (ATM) and ATM-and Rad3-related (ATR) kinases, which are members of the phosphatidylinositol 3-kinase-like kinase (PIKK) family. ATM is recruited to double-strand breaks (DSBs) in part by the MRN (MRE11-RAD50-NBS1) complex, whereas ATR-with its regulator ATRIP (ATR-interacting protein)-senses replication protein A (RPA)-coated single-stranded DNA (ssDNA) that is generated from stalled replication forks or from the processing of DSBs (7-10). When activated, ATM and ATR phosphorylate various substrates at their serine and/or threonine residues within the conserved S/TQ motif, thereby inducing DDR to pause cell cycle progression and activate DNA repair processes (11).The RAD51 recombinase plays a central role in the homologous recombination (HR)-mediated repair of DSBs, daughterstrand gaps (DSGs), and interstrand cross-links (ICLs) (10, 12). Mammals possess five RAD51 paralogs-RAD51B, RAD51C, RAD51D, XRCC2, and XRCC3-which have been implicated in RAD51-mediated HR. RAD51 paralog-deficient cells exhibit sensitivity to DNA damage, spontaneous chromosomal aberrations, reduced RAD51 nuclear focus formation, and decreased HR (12, 13). These paralogs act in the BRCA1/2 pathway to control HR (14, 15). The RAD51 paralogs differentially regulate both shortand long-tract gene conversions and have been implicated in the late stages of HR for resolving recombination intermediates (16,17). In addition to HR, RAD51 paralogs have been implicated in chromosome segregation and in the prevention of aberrant...