a b s t r a c t Different DNA repair systems are known to cooperate to deal with DNA damage. However, the regulatory role of the cross-talk between these pathways is unclear. Here, we have shown that MutL, an essential component of mismatch repair, is a RecA-interacting protein, and that its highly conserved N-terminal domain is sufficient for this interaction. Surface plasmon resonance and capillary electrophoresis analyses revealed that MutL has little effect on RecA-ssDNA filament formation, but dose down-regulate the ATPase activity of RecA. Our findings identify a new role for MutL, and suggest its regulatory role in homologous recombination.Ó 2011 Published by Elsevier Inc.
IntroductionLiving organisms are continuously exposed to damaging agents from both internal and external environments. Cells have therefore evolved several repair systems to counteract potential threats to the stability of DNA and allow the accurate transmission of genetic information [1]. One such repair system is homologous recombination, a high fidelity DNA repair mechanism found in all forms of life that plays a very important role in the repair of double-stranded DNA breaks [2]. The Escherichia coli RecA protein plays an essential role in this repair pathway and has been used as a model system for studying DNA strand exchange, the central step of homologous recombination [3,4]. Like archaeal RadA and eukaryotic Rad51, bacterial RecA promotes an ATP-mediated strand exchange reaction by polymerizing on DNA and forming a helical filament [5].It is well known that there is cross-talk between different DNA repair pathways [6,7]. It has been suggested that there is cross-talk between homologous recombination and the mismatch repair system, since recombination between highly diverged sequences is differentially inhibited by the mismatch repair system [8,9]. MutL, a mismatch repair protein with DNA binding and ATPase activity, has also been reported to enhance MutS's inhibition of RecA-mediated homologous strand exchange between sequences which differ by 3% at the nucleotide level [10]. In mammalian cells, hMLH1, the homolog of MutL, also appears to monitor homologous recombination independent of mismatch repair [6]. However, the mechanism underlying the cross-talk between homologous recombination and the mismatch repair system, and in particular how MutL exerts its effect on homologous strand exchange, is unclear.Here we show that there is a physical interaction between MutL and the recombinase protein RecA, and that the highly conserved N-terminal domain of MutL is essential for this interaction. MutL down-regulates RecA ATPase activity, but does not affect RecA-ssDNA filament formation. Our results support the hypothesis that MutL may play a regulatory function in homologous recombination through its interaction with RecA.
Materials and methods
Protein purificationAll strains were grown routinely in Luria-Bertani (LB) media. Antibiotics were added when required at the following concentrations: ampicillin, 100 lg/ml; kanamycin, 60 lg/ml....