Microtubules are hollow cylindrical structures that constitute one of the three major classes of cytoskeletal filaments. On the mesoscopic length scale of a cell, their material properties are characterized by a single stiffness parameter, the persistence length ഞp. Its value, in general, depends on the microscopic interactions between the constituent tubulin dimers and the architecture of the microtubule. Here, we use single-particle tracking methods combined with a fluctuation analysis to systematically study the dependence of ഞ p on the total filament length L. Microtubules are grafted to a substrate with one end free to fluctuate in three dimensions. A fluorescent bead is attached proximally to the free tip and is used to record the thermal fluctuations of the microtubule's end. The position distribution functions obtained with this assay allow the precise measurement of ഞ p for microtubules of different contour length L. Upon varying L between 2.6 and 47.5 m, we find a systematic increase of ഞp from 110 to 5,035 m. At the same time we verify that, for a given filament length, the persistence length is constant over the filament within the experimental accuracy. We interpret this length dependence as a consequence of a nonnegligible shear deflection determined by subnanometer relative displacement of adjacent protofilaments. Our results may shine new light on the function of microtubules as sophisticated nanometer-sized molecular machines and give a unified explanation of seemingly uncorrelated spreading of microtubules' stiffness previously reported in literature.nanomechanics ͉ protofilaments ͉ single-particle tracking ͉ thermal fluctuation analysis T he mechanics of living cells is largely determined by the cytoskeleton, a self-organizing and highly dynamic network of filamentous proteins of different lengths and stiffnesses (1). Understanding the elastic response of purified cytoskeletal filaments is fundamental for the elucidation of the rheological behavior of the cytoskeleton. Microtubules (MTs) are hollow cylindrical filaments formed by, on average, 13 tubulin protofilaments (PFs) assembled in parallel. The MT outer and inner diameters are Ϸ25 and 15 nm, respectively. In cells, MTs are generally 1-10 m long, whereas in axons their length can be 50-100 m (2).The tubular structure of MTs implies a minimal crosssectional area, hence a high strength and stiffness combined with low density. In recent years, the mechanical properties of MTs have been investigated by several experimental approaches, such as thermal fluctuations (3-6), atomic force microscopy (AFM) (7-10), and optical tweezers (11-13).The standard reference model to describe the mechanical properties of a biopolymer on length scales much larger than any microscopic scale (the tube diameter for MTs) is the worm-like chain model (14,15). It is characterized in terms of a flexural rigidity (neglecting torsional rigidity). The combined effect of flexural rigidity and thermal fluctuations on the conformation of the filament is given by the ratio ...