Silicon nanocrystals exhibit optoelectronic properties that are favorable for applications such as sensing and biological imaging. Synthesizing a stimuli responsive material with controlled hydrophilicity can benefit these applications. One of the most promising surface species for inducing reversible control of hydrophilicity contains amidine functional groups; unfortunately, this functionality will also bind to the nanocrystal surface and influence the photoluminescence of the material. To combat these limitations, a Lewis acid protection method has been developed to prevent the nitrogen atoms from attaching to the silicon surface for the functionalization of amidine terminated silicon nanocrystals.