Chromatin structure is regulated, in part, by affecting the acetylation of lysine residues on the amino-terminal tails of nucleosomal histones. The acetylation state of histones is maintained by the opposing actions of histone acetyl transferase and histone deacetylase (HDAC) enzymes. There are 11 known isoforms in the classic HDAC family, denoted HDAC 1-11 (1). In addition to histones, HDAC enzymes are known to deacetylate other proteins, including ␣-tubulin (2), suggesting complex, multifunctional roles for HDACs in vivo.PCI-24781 (formerly CRA-024781) is a broad-spectrum phenyl hydroxamic acid HDAC inhibitor currently being evaluated in phase I clinical trials in patients with neoplastic disease (3). The compound is a specific inhibitor of multiple HDAC isoforms that potently inhibits tumor growth in vivo with acceptable toxicity. PCI-24781, along with other HDAC inhibitors also in clinical development, represent a promising class of anticancer therapy agents (4, 5). In addition to evidence of efficacy as a monotherapy, some HDAC inhibitors have been shown to inhibit tumor growth synergistically when administered together with ionizing radiation (IR) or with DNA-interacting cancer drugs in preclinical models (6-12). It has been suggested that the mechanism of the synergy may involve the inhibition of DNA double-strand break (DSB) repair, because after cellular irradiation, HDAC inhibition enhances and prolongs the phosphorylation of histone H2AX, a well characterized marker of DNA DSBs (13-17).In mammalian cells, DSBs are repaired by one of two genetically distinct processes, known as nonhomologous end joining (NHEJ) or homologous recombination (HR) (18). NHEJ is the simpler, but more error-prone mechanism, in which the DNA ends are recognized and bound by the Ku heterodimer, which recruits DNA-PK and other proteins to directly ligate the two DNA termini. By comparison, HR is a process of greater accuracy and complexity, requiring the presence of a sister chromatid to serve as a template for repair. HR begins with strand recognition and nucleolytic processing by the MRE11-RAD50-NBS1 (MRN) complex, followed by strand invasion, branch migration, and Holliday junction formation (18,19). Both strand invasion and branch migration are initiated by RAD51, a recA homolog that binds MRN-generated ssDNA, forming nucleoprotein filaments essential for recombinational repair. After exposure to IR, RAD51 rapidly forms a complex with BRCA2 and other proteins that stimulate RAD51-mediated strand exchange and the assembly of subnuclear foci characteristic of HR (20,21). Cells lacking functional RAD51 are unable to form foci and are significantly more sensitive to IR (22). In addition to repair of IR-induced DNA damage, recent evidence suggests that RAD51 (and HR) is involved in the repair of DNA DSBs produced by cisplatin and other platinum agents (23, 24) and also in the repair of DSBs produced by stalled replication forks (25), such as those produced by inhibitors of poly(ADP-ribose) polymerase (PARP) (26)(27)(28).In the pr...