Human T lymphocytes, bearing T cell receptor (TCR) ␥␦, play an important role in anti-tumor/microbe immune responses. However, few tumor antigens recognized by TCR␥␦ have been defined so far. To investigate antigenic epitopes/proteins recognized by ␥␦T cells, we have established a new immunobiochemical strategy that uses complementarity-determining region 3 of TCR ␦ chain (CDR3␦) peptide-mediated epitope/protein-binding assays. CDR3␦ peptides synthesized using the CDR3 region in TCR V␦2 chain were validated for their binding specificity to target cells or tissues. These CDR3␦ peptides were then employed as probes to pan putative epitopes in a 12-mer random peptide phage-displayed library and to identify putative protein ligands within tumor protein extracts by affinity chromatography and liquid chromatography/electrospray ionizationtandem mass spectrometry analysis. As a result, we have identified nine peptides and two proteins for TCR␥␦, including human mutS homolog 2 (hMSH2) and heat shock protein (HSP) 60. All nine tested epitope peptides not only bind to ␥␦T cells but also functionally activate ␥␦T cells in vitro. Identification of HSP60 confirms the validity of this method as HSP60 is an identified ligand for TCR␥␦. We show that hMSH2 is expressed on the surface of SKOV3 tumor cells, and cytotoxicity of V␦2 ␥␦T cells to SKOV3 cells was blocked by anti-hMSH2 antibody, suggesting that hMSH2 may be a new ligand for TCR␥␦. Taken together, our findings provide a novel immunobiochemical strategy to identify epitopes/proteins recognized by ␥␦T cells.
T lymphocytes are classified structurally into two types according to different T cell receptors (TCR)3 ␣ or ␥␦. TCR␣ specifically recognize antigenic peptides (epitopes) presented by MHC I/II molecules. Although many peptide ligands have been identified for TCR␣ (1), only a few ligands have been identified for TCR␥␦ so far (2, 3).Human ␥␦T cells account for ϳ5% of CD3 ϩ T cells in the peripheral blood, but constitute a major T cell subset in other anatomic locations, such as the intestine. In the peripheral blood of healthy individuals, TCR V␦2 chain pairing with one particular V␥9 chain is expressed on 50 -90% of the ␥␦T cells, whereas intestinal intraepithelial ␥␦T cells frequently express the V␦1 gene, which can associate with different V␥ elements (4). The antigen-binding site of TCR␥␦ is formed primarily from three complementarity-determining regions (CDRs) contributed by each V␥ and V␦ domain. CDR1 and CDR2 fragments are encoded by germ line V genes, whereas the CDR3 is formed by somatic rearrangement of V(D) and J fragments. Sequence diversity in antigen receptors is not evenly distributed among all six CDRs but is highly concentrated in one or two CDR3. It had been proposed that the principal antigen specificity of an immunoglobulin or TCR is derived from its most diverse CDR3 fragments (5).In addition to TCR diversity, structures of the TCR-CD3 complex, and tissue distribution, the pattern of antigenic recognition is another key difference between ␥␦T cel...