“…Haplotypes C1 and C3 are considered eastern wolf specific based on previously published phylogenetic analyses (Wilson et al, 2000;Rutledge et al, 2009). Although haplotypes C9, C13 and C17 cluster phylogenetically with coyote haplotypes, leading some to interpret them as coyote specific (for example, Leonard and Wayne, 2008;Kays et al, 2010), they are interpreted here as eastern wolf specific because they are not known to occur in non-hybridized western coyote populations; their presence in eastern wolves is due to either incomplete lineage sorting or hybridization during the last glaciation event B11 000 years ago (Wheeldon and White, 2009). This assumption is reasonable, given the presence of coyote-like haplotypes in eastern wolves approximately 30-400 years before western coyote expansion Rutledge et al, 2009), and the assignment of a coyote-like sequence as red wolf (C. rufus) specific (Hailer and Leonard, 2008).…”