Evidence is presented that intracellular ammonium is trapped in vacuoles of maize (Zea mays L.) root tips because of rapid movement of ammonia between cytoplasm and vacuoles. The concentration of cytoplasmic ammonium is estimated to be <15 Mm at extracellular ammonium concentrations up to 1 mm. The implications for pathways of ammonium assimilation are discussed.The concentration of NH4' in the various compartments of plant cells has a direct bearing on the pathway of NH4' assimilation, because the enzymes GDH2 and GS have very different affinities for NH4' (25). Published estimates of the concentration of NH4+ in maize leaf mitochondria (31), root cytoplasm (10), and soybean nodule cytosol (7,29) have been in the millimolar range, similar to the Km of GDH for NH4+. These results suggest that GDH could catalyze significant assimilation of NH4' in plants. However, Streeter (27) estimated the NH4+ concentration in soybean nodule cytosol to be 'essentially nil. ' The cytoplasmic NH4' concentration may also be important with respect to pH gradients between intracellular compartments; millimolar concentrations of NH4' can collapse transmembrane pH gradients in vitro (3). Solutions of NH3 have been shown to rapidly and dramatically increase intracellular pH (15, 21). Biomembranes are highly permeable to NH3 (6). However, the significance of transmembrane fluxes of NH3 in plant cells exposed to solutions in which NH4' predominates over NH3, as occurs under normal physiological' conditions, is unclear (cf. refs. 6, 10, 12, 13, 16). Here, we describe the effects of extracellular NH4+ on cytoplasmic and vacuolar pHs using 3'P and 13C NMR, respectively. We present evidence for rapid equilibration of NH3 between cytoplasm and vacuole and estimate the concentrations of NH4+ in the different intracellular compartments.