, cheol-Ho pan 2 & Youn-il park 1* Like other halophilic cyanobacterial genomes, the de novo-assembled genome of Euhalothece sp. Z-M001 lacks genes encoding keto-carotenoid biosynthesis enzymes, despite the presence of genes encoding carotenoid-binding proteins (cBps). consistent with this, HpLc analysis of carotenoids identified β-carotene and zeaxanthin as the dominant carotenoids. CBPs coexpressed with the zeaxanthin biosynthesis gene increased the survival rates of Escherichia coli strains by preventing antibiotic-induced accumulation of reactive oxygen species (ROS). RNA-seq analysis of Euhalothece revealed that among various salt resistance-related genes, those encoding the na + transporting multiple resistance and pH adaptation (Mrp) systems, glycine betaine biosynthesis enzymes, exopolysaccharide metabolic enzymes, and CBPs were highly upregulated, suggesting their importance in hypersaline habitats. During the early phase of salt deprivation, the amounts of β-carotene and zeaxanthin showed a negative correlation with ROS content. Overall, we propose that in some halophilic cyanobacteria, β-carotene and zeaxanthin, rather than keto-carotenoids, serve as the major chromophores for CBPs, which in turn act as effective antioxidants. Cyanobacteria are photosynthetic prokaryotes that exhibit diverse protective mechanisms to cope with harsh environmental conditions. One of the protective mechanisms involves the use of carotenoids 1 and diverse carotenoid-binding proteins (CBPs) 2 , which play essential roles in protecting the photosynthetic apparatus from damage by both excess light energy and reactive oxygen species (ROS). Most cyanobacterial CBPs bind to β-carotene (β-Car) and its oxygenated derivatives, called xanthophylls (Xan), and are located in photosynthetic protein complexes such as photosystem I (PSI), PSII, and cytochrome b 6 f 3. By contrast, water soluble CBPs bind non-covalently to cyanobacterial keto-carotenoids, such as echinenone (Ech) and canthaxanthin (Can), and to glycosylated-carotenoids such as myxoxanthophyll (Myx) 4 ; CBPs then function as effective energy dissipaters by interacting with the light-harvesting antenna, phycobilisome (PBS) 5. CBPs also bind to zeaxanthin (Zea), albeit with low affinity 6. The orange carotenoid protein (OCP) and its two paralogs, helical carotenoid protein (HCP) and C-terminal domain homolog (CTDH), are the only known soluble CBPs 4. The OCP is composed of two globular domains (one each at the N-and C-terminal ends); a single carotenoid is embedded between the two domains via a hydrophobic interaction 7. Blue light absorption by a keto-carotenoid results in a conformational change in the OCP, from the orange inactive form (OCP°) to the red active form (OCP R). Binding of OCP R to PBS quenches PBS fluorescence, which is prevented by fluorescence recovery protein (FRP) 8. FRP prevents accumulation of the OCP R by interacting with the C-terminal domain of OCP 8. The biological functions of HCPs, which are grouped into nine distinct clades 7 , are largely unknow...