The effects of the binding of the E. coli UvrA and UvrB proteins on the linking number (AL) of superhelical DNA has been measured. The effects of cofactor ATP structure on UvrAB-nucleoprotein complex formation revealed that nucleotide binding, not hydrolysis; is sufficient to locally unwind the DNA helix of both ultraviolet light-damaged as well as undamaged DNAs. The extent of this unwinding is of the same order of magnitude as the nucleotide distances of the double incision sites generated by the UvrABC endonucleolytic reaction.
INTRODUCTIONThe E. coli uvr repair system is unique in that its specificity is sufficiently broad to accommodate a wide spectrum of seemingly different kinds of DNA damaging agents. As a consequence, organisms possessing such a system can respond to a plethora of environmental hazards without having to evolve new enzyme systems as new types of agents are introduced into its environment. Parenthetically, the spectrum of agents to which E. coli uvr mutants are sensitive is remarkably similar to the damage sensitivity of human repair-deficient skin fibroblasts derived from xeroderma pigmentosum patients (1). These findings suggest that the enzyme mechanisms may be similar and point to the significance of studying the E. coli uvr system as a model for a DNA repair deficiency amongst patients predisposed to skin cancer The incision components of the E. coli uvr repair system responsible for the initial recognition of damaged DNA consists of the UvrA protein which in the presence of ATP binds to the damaged DNA, as well as to undamaged DNA duplexes (2). The UvrA protein requires thesimultaneous presence of the UvrB and UvrC proteins to initiate a dual incision event in DNAs containing ultraviolet light induced pyrimidine dimers (3,4) and 6,4-pyrimidine-pyrimidone adducts (3), photoactivated psoralen mono-and diadducts (5), acetylaminofluorine-guanine adducts (5), cis-platinum-guanine adducts (6) and benzo[a]pyrene-guanine adducts (7). In almost all of those experiments carried out with DNA substrates of defined sequences, the dual incision events were shown to involve a 5'-incision event 7 nucleotides to a damaged site and 3-4 nucleotides 3'-to the same site. In spite of the fact that the primary chemical events are dissimilar and the extent to which these agents distort DNA, the sites of incision are