Phylogenetic relationships among herpesviruses (HVs) of mammals, birds, and reptiles have been studied extensively, whereas those among other HVs are relatively unexplored. We have reconstructed the phylogenetic relationships among 13 fish and amphibian HVs using maximum likelihood and Bayesian analyses of amino acid sequences predicted from parts of the DNA polymerase and terminase genes. The relationships among 6 of these viruses were confirmed using the partial DNA polymerase data plus the complete sequences of the terminase, helicase, and triplex protein genes; the position of these viruses among all other sequenced HVs was also investigated using the complete terminase gene. The results established the monophyly of the fish and amphibian HVs (Alloherpesviridae) separate from the HVs of mammals, birds, and reptiles (Herpesviridae) and the single recognized HV of bivalve mollusks (Malacoherpesviridae) in the order Herpesvirales. Two major clades in the family Alloherpesviridae were recognized: one consisting of viruses from cyprinid and anguillid hosts and the other of viruses from ictalurid, salmonid, acipenserid, and ranid hosts. A comparison of virus and host phylogenies suggested that closely related HVs in this family may have coevolved with their hosts, whereas significant codiversification was not apparent for the more distantly related viruses.KEY WORDS: Alloherpesviridae · Fish herpesviruses · Frog herpesviruses · Phylogeny · Coevolution· DNA polymerase · Terminase
Resale or republication not permitted without written consent of the publisherDis Aquat Org 84: [179][180][181][182][183][184][185][186][187][188][189][190][191][192][193][194] 2009 pesviridae, divided into the subfamilies Alphaherpesvirinae, Betaherpesvirinae, and Gammaherpesvirinae) containing mammalian, avian, and reptilian viruses, one (Alloherpesviridae) containing fish and amphibian viruses, and one (Malacoherpesviridae) containing a single virus, OsHV1. The taxonomic structure of the family Herpesviridae has been well established phylogenetically, and the viruses are characterized by approximately 43 homologous genes that were presumably inherited from a common ancestor (McGeoch et al. 2006). The erection of the 2 new families was driven by the findings that these viruses are but tenuously related to the fish and amphibian HVs, which share at least 13 homologous genes with each other (Aoki et al. 2007), and that OsHV1 is related only marginally to all other HVs (Davison et al. 2005b). Indeed, the best, and perhaps only, sequence-based evidence supporting a common ancestry for all HVs resides in a single gene, that encoding the putative ATPase subunit of terminase (hereafter terminase; an enzyme complex involved in packaging DNA into capsids), in which 5 regions are conserved (Davison 1992(Davison , 2002. This protein is also conserved to a lesser extent in T4-like bacteriophages in the family Myoviridae (Davison 1992). Indeed, the perceived utilization of a similar enzyme complex for packaging DNA into preformed capsids...