Engineers practicing model based system design in an automotive sub-system supplier often use Modelica for modeling physical plant models and MATLAB/Simulink® for modeling the controller. Model-in-loop (MIL) simulations are performed using the S-function generated from the chosen Modelica plant model, integrated with the appropriate controller model and then simulated in Simulink. These steps are carried out by the engineer manually for the many different plant-controller configurations available in the organization. This repetitive workflow provides significant opportunities to streamline and automate the model based development process and improve productivity.This paper presents an in-house MATLAB® GUI tool that can be used to configure the plant, select the controller, automatically generate an integrated model with the plant and controller, and simulate the resulting model. The plant model configuration information is passed on to Dymola® (the simulation environment) using the available communication (COM or DDE) to generate the plant model Sfunction. This tool includes post processing capabilities such as plotting the simulation results and custom plotting of metrics that are generated postsimulation.