A methodology to estimate the shear model of seismically excited, torsionally coupled buildings using acceleration measurements of the ground and floors is presented. A vector parameterization that considers Rayleigh damping for the building is introduced that allows identifying the stiffness/mass and damping/mass ratios of the structure, as well as their eccentricities and radii of gyration. This parameterization has the advantage that its number of parameters is smaller than that obtained with matrix parameterizations or when Rayleigh damping is not used. Thus, the number of spectral components of the excitation signal required to identity the structural parameters is reduced. To deal with constant disturbances and measurement noise that corrupt acceleration measurements, Linear Integral Filters are used that guarantee elimination of constant disturbances and attenuation of noise.