Carboxamide groups are interesting models of study in
crystal engineering
as they can be hydrogen-bond acceptors and donors. In this sense,
organic molecules containing carboxamide groups could act as acceptors
for water molecules, enabling hydrate formation. To study amide-based
hydrate formation, a series of crystal structures of pyridine-2,6-dicarboxamides
(carboxamide groups are −C(O)-NH-R, where R = (1) CH2CHPh2, (3) CH2CH2Ph, (4) CH2Ph, (5) Ph-4-F, (6) Ph-4-Cl, (7) Ph-4-Br, and
(8) naphth-1-yl) were chosen. A similar compound containing
benzene 1,3-dicarboxamide substituted (2) was also included.
Compounds 1 and 3–8 presented a structure
with folded molecular conformation, where the amide chains showed
the two NH groups positioned between both chains. Compound 2 had a linear molecular structure, where the amide chains were distant
from each other. Compounds 1 and 3 presented
hydrate phases (1:1), with 1 showing three polymorphic
phases. Compounds 2 and 4–8 had anhydrous
crystalline phases. Crystallization mechanisms of compounds 1–8 were proposed using the supramolecular
cluster as demarcation and corroborated with the concentration-dependent 1H NMR experiments. Our findings enabled us to propose the
stages in which each polymorph was formed, and the proposed crystallization
mechanisms presented as first-stage stacking molecules for 1I-1II and 4–8 (one-dimensional nuclei), two-dimensional
growth for 2, and dimer formation for 1III and 3. QTAIM analysis was used for a more detailed
evaluation of intermolecular interaction contributions. The steric
hindrance caused by the aryl groups is the possible reason for the
greatest difficulty in forming hydrates for compounds 4–8. The water molecules in 1I-1III and 3 occupy the cavity formed by the organic
molecules since the early crystallization stage. In this sense, it
was possible to contribute insights regarding the influences between
molecular conformation and the formation of hydrate structures.