Recently published <scp><i>S</i></scp><i>treptomyces</i> genome sequences

Harrison, James W.; Studholme, David J.

doi:10.1111/1751-7915.12143

Cited by 63 publications

(65 citation statements)

References 48 publications

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“…Genetic instability is widespread within the genus Streptomyces [8,[17][18][19]. This important phenomenon includes a high frequency loss (>0.1 % of plated spores) of certain species specific traits, several of which are mapped to the chromosome [20][21][22].…”

Section: Resultsmentioning

confidence: 99%

“…Most Streptomycetes contain up to 50 gene clusters involved in the synthesis of secondary metabolites [3,8,10]. For example, the genomes of S. griseus and S. avermitilis contain 34 and 30 secondary metabolite clusters, respectively [18].…”

Section: Resultsmentioning

confidence: 99%

“…With the emergence of data indicating that most Streptomycetes contain up to 30 gene clusters involved in the synthesis of secondary metabolites, it has become clear that their biosynthetic potential is underestimated [3,8,9,11,12]. Nowadays many efforts are made to estimate this potential and to get access to the natural products, the biosynthetic pathways of which are encoded in the genomes of the corresponding Streptomyces strains [13][14][15].…”

Section: Issn 1993-6842 (On-line); Issn 0233-7657 (Print)mentioning

confidence: 99%

“…Nowadays many efforts are made to estimate this potential and to get access to the natural products, the biosynthetic pathways of which are encoded in the genomes of the corresponding Streptomyces strains [13][14][15]. The accumulation of high quality genome sequencing data will strongly contribute to implementation of this task [3,4,[6][7][8][9][10][11].…”

Section: Issn 1993-6842 (On-line); Issn 0233-7657 (Print)mentioning

confidence: 99%

“…N 3. P 206-213 doi: http://dx.doi.org/10.7124/bc.000952 genetic maps, definition of rules of genome functioning [3][4][5][8][9][10].…”

Section: Introductionmentioning

confidence: 99%

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Similarity and dissimilarity of primary structures of some Streptomyces spp. genomes and the Streptomyces globisporus 1912-2 chromosomal DNA.

Polishchuk¹

2017

Biopolym. Cell

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Aim.To determine the similarity and dissimilarity of the nucleotide sequences of the S. globisporus 1912-2 chromosome and primary structures of genomes of some Streptomycetes strains. Methods. NCBI tools (BLAST: blastn and bl2seq: megablast) and Internet NCBI databases (Genome, Nucleotide) were used for in silico analysis of the primary structure contigs of S. grlobisporus 1912-2. Results. A few strains with significant identity of their DNA primary structures to the nucleotide sequences of the chromosomal DNA of S. globisporus 1912-2 (identity 88-97 %) and a degree of query cover (55-82 %) were identified. Primary structures of genomes of the strains S. globisporus C-1027 and S. griseus NBRC13350 were chosen as most identical to the nucleotide sequence of the S. globisporus 1912-2 chromosomal DNA. No fragments with a homologous primary structure to seven S. globisporus 1912-2 contigs were found in Streptomycetes spp. from the NCBI databases. Conclusions. S. globisporus 1912-2 strain is a member of the S. griseus clade. We detected a high biosynthetic potential of the strain S. globisporus 1912-2 due to many unique nucleotide sequences. K e y w o r d s:Streptomyces, primary structure, genome, identity, in silico analysis, clade.

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Section: Resultsmentioning

confidence: 99%

Section: Resultsmentioning

confidence: 99%

Section: Issn 1993-6842 (On-line); Issn 0233-7657 (Print)mentioning

confidence: 99%

Section: Issn 1993-6842 (On-line); Issn 0233-7657 (Print)mentioning

confidence: 99%

“…N 3. P 206-213 doi: http://dx.doi.org/10.7124/bc.000952 genetic maps, definition of rules of genome functioning [3][4][5][8][9][10].…”

Section: Introductionmentioning

confidence: 99%

See 3 more Smart Citations

Similarity and dissimilarity of primary structures of some Streptomyces spp. genomes and the Streptomyces globisporus 1912-2 chromosomal DNA.

Polishchuk¹

2017

Biopolym. Cell

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Horizontal Gene Transfer and Genome Evolution in the Phylum Actinobacteria

Park

Smith

Andam

2019

Horizontal Gene Transfer

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Use of Genomic Approaches in Understanding the Role of Actinomycetes as PGP in Grain Legumes

Sharma

Tarafdar

Ghosh

2016

Plant Growth Promoting Actinobacteria

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The advancement in molecular technologies has given a breakthrough to explore the untapped and novel microbial isolates for characterization in every aspect as we can consider microbes as an important primary natural store house for key secondary metabolites and enzymes. Actinomycetes are the most fruitful source of microorganisms for all types of bioactive secondary metabolites, including agroactive-antibiotic molecules that are best recognized and most valuable for their role in agriculture and industries. In agriculture, actinomycetes are used as biocontrol agents against some pests and pathogenic organisms as well as plant growth-promoting (PGP) agents for crops. Use of different molecular methods, e.g., metagenomics, metatranscriptomics, genetic fingerprinting, proteogenomics, and metaproteomics, are more significant for classifying and discovering the immense diversity in microbial population and for understanding their interactions with other abiotic and biotic environmental elements. The opportunity of accessing inexpensive sequencing techniques has led to the assemblies of copious genomic data for actinomycetes, such as Streptomyces and related species, with the goal of discovering novel bioactive metabolic and their utility as PGP; however, the use of actinomycetes in agriculture using genomic approaches is in its initial stages.

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Recently published Streptomyces genome sequences

Cited by 63 publications

References 48 publications

Similarity and dissimilarity of primary structures of some Streptomyces spp. genomes and the Streptomyces globisporus 1912-2 chromosomal DNA.

Similarity and dissimilarity of primary structures of some Streptomyces spp. genomes and the Streptomyces globisporus 1912-2 chromosomal DNA.

Horizontal Gene Transfer and Genome Evolution in the Phylum Actinobacteria

Use of Genomic Approaches in Understanding the Role of Actinomycetes as PGP in Grain Legumes

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