Mycoplasma hyopneumoniae is an economically significant swine pathogen that colonizes the respiratory ciliated epithelial cells. Cilium adherence is mediated by P97, a surface protein containing a repeating element (R1) that is responsible for binding. Here, we show that the cilium adhesin is proteolytically processed on the surface. Proteomic analysis of strain J proteins identified cleavage products of 22, 28, 66, and 94 kDa. N-terminal sequencing showed that the 66-and 94-kDa proteins possessed identical N termini and that the 66-kDa variant was generated by cleavage of the 28-kDa product from the C terminus. The 22-kDa product represented the N-terminal 195 amino acids of the cilium adhesin preprotein, confirming that the hydrophobic leader signal sequence is not cleaved during translocation across the membrane. Comparative studies of M. hyopneumoniae strain 232 showed that the major cleavage products of the cilium adhesin are similar, although P22 and P28 appear to be processed further in strain 232. Immunoblotting studies using antisera raised against peptide sequences within P22 and P66/P94 indicate that processing is complex, with cleavage occurring at different frequencies within multiple sites, and is strain specific. Immunogold electron microscopy showed that fragments containing the cilium-binding site remained associated with the cell surface whereas cleavage products not containing the R1 element were located elsewhere. Not all secreted proteins undergo multiple cleavage, however, as evidenced by the analysis of the P102 gene product. The ability of M. hyopneumoniae to selectively cleave its secreted proteins provides this pathogen with a remarkable capacity to alter its surface architecture.Mycoplasma hyopneumoniae, the etiological agent of enzootic pneumonia, significantly impacts swine production (28). During colonization, M. hyopneumoniae forms an intricate association with the ciliated epithelial lining of the porcine respiratory tract, leading to chronic respiratory disease. Colonization disrupts the normal function of the mucociliary escalator through ciliostasis, loss of cilia, epithelial cell death, and acute inflammation. This results in a purulent exudate (composed primarily of neutrophils and mononuclear cells) in the airways (17). Disease resolution occurs only after a prolonged period (if at all). M. hyopneumoniae colonization also predisposes the host to more-severe infections from secondary pathogens (2). For example, it is now clear that colonization by M. hyopneumoniae leads to more-severe and longer-lasting disease with the porcine respiratory and reproductive syndrome virus (34). Thus, the impact of M. hyopneumoniae on swine production has not been fully realized.It is known that the initial event in colonization by M. hyopneumoniae is binding to swine respiratory cilia (19,32). In the absence of binding activity, colonization does not occur (38). Identification of the molecules involved in cilium binding occurred only after the discovery of adherence-blocking monoclonal antibod...