SummaryPrevious work has demonstrated that intergenic V(D)J rearrangement, a process referred to as trans-rearrangement, occurs at an unexpectedly high frequency. These rearrangements generate novel V(D)J combinations which could conceivably have some role in the normsd immune system, and since they probably arise through chromosomal rearrangements akin to those associated with lymphoid neoplasia, they may also serve as a model for investigating recombinational events which underlie oncogenesis. In view of the existence of a mechanism that permits relatively frequent intergenic trans-rearrangements, it seems reasonable that interallelic trans-rearrangements involving segments bdonging to each of the two alleles of a single antigen receptor gene might also occur. To determine the frequency of such rearrangements, we examined thymocytes of F1 progeny of a cross between SWR mice, which have a deletion spanning 10 of the known V0 segments, and NZW mice, which have a deletion involving all Jr32 segments. Rearranged TCR-/3 genes containing V/~ segments from the NZW chromosome and Ja segments from the SWR chromosome were amplified from the DNA of F1 thymocytes with the polymerase chain reaction. Using this approach, we found that such rearrangements are relatively uncommon, being present in about 1 in 10 s thymocytes, a frequency lower than that of V.~/J0 intergenic trans-rearrangements. The ratio of conventional c/s-rearrangement to interalldic truns-rearrangement for any particular Vt~ segment appears to be about 104:1. The structure of the junctions in all trans-rearrangements analyzed closely resembles conventional c/s-rearrangements, indicating involvement of V(D)J recombinase in the ultimate joining event. However, in contrast to c/srearrangements, a strong bias for inclusion of Dal segments over Da2 segments was noted, suggesting that interallel~c trans-rearrangement may occur preferentiaUy during attempted D-J joining. J02 segment usage in trans-rearrangements also appeared to differ from that expected from previously studied c/s-rearrangements. The results have implications with respect to the events and timing of conventional c/s-rearrangement during thymocyte differentiation, and the prevalence of various types of trans-rearrangements.
Somatic rearrangement of DNA constitutes a fundamental event leading to the production of structurally diverse antigen receptor genes (ARGs). 1 This process, which is believed to be mediated by a lymphoid-specific recombinase, results in the assembly of variable (V), joining 0), and, in some loci, diversity (D) gene segments, into potentially functional Ig and TCR genes. Conserved heptamer and nonamer sequences separated by 11-12 or 22-23 bp flank each type of rearranging segment, and function as critical signal sequences for recombination, which typically occurs within a few base pairs to one side of the heptamer sequence (1, 2).1 Abbreviation used in this paper: ARG, antigen receptor gene.C/s-scanning of ARG DNA by recombinase during intragenie rearrangement is the simplest ...