Liver ischemia reperfusion injury (IRI) is an important problem in liver transplantation. Thrombomodulin (TM), an effective drug for disseminated intravascular coagulation, is also known to exhibit an anti-inflammatory effect through binding to the high-mobility group box 1 protein (HMGB-1) known as a proinflammatory mediator. We examined the effect of recombinant human TM (rTM) on a partial warm hepatic IRI model in wild-type (WT) and tolllike receptor 4 (TLR-4) KO mice focusing on the HMGB-1/TLR-4 axis. As in vitro experiments, peritoneal macrophages were stimulated with recombinant HMGB-1 protein. The rTM showed a protective effect on liver IRI. The rTM diminished the downstream signals of TLR-4 and also HMGB-1 expression in liver cells, as well as release of HMGB-1 from the liver. Interestingly, neither rTM treatment in vivo nor HMGB-1 treatment in vitro showed any effect on TLR-4 KO mice. Parallel in vitro studies have confirmed that rTM interfered with the interaction between HMGB-1 and TLR-4. Furthermore, the recombinant N-terminal lectin-like domain 1 (D1) subunit of TM (rTMD1) also ameliorated liver IRI to the same extent as whole rTM. Not only rTM but also rTMD1 might be a novel and useful medicine for liver transplantation. This is the first report clarifying that rTM ameliorates inflammation such as IRI in a TLR-4 pathway-dependent manner.Abbreviations: DIC, disseminated intravascular coagulation; dUTP, deoxyuridine triphosphate; Erk, extracellular signal-regulated kinase; GAPDH, glyceraldehyde-3-phosphate; HMGB-1, high-mobility group box 1 protein; IRF-3, interferon regulatory factor 3; IRI, ischemia reperfusion injury; JNK, c-Jun NH2-terminal kinase; LPS, lipopolysaccharide; MAPK, mitogen-activated protein kinase; MD-2, myeloid differentiation factor 2; Myd88, myeloid differentiation primary response 88; NF-jB, nuclear factor kappa B; NLRP-3, nod-like receptor protein 3; PI3K, phosphatidylinositol-3 0 -kinase; p-IjBa, phosphorylated inhibitory protein of NF-jB; qPCR, quantitative reverse-transcription polymerase chain reaction; rTMD1, recombinant N-terminal lectin-like domain 1 of thrombomodulin; rTM, recombinant human thrombomodulin; sALT, serum alanine aminotransferase; TLR-4, toll-like receptor 4; TM, thrombomodulin; TNF-a, tumor necrosis factor a; TUNEL, terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick-end labeling