Interactions of the F 1 F 0 -ATPase subunits between the cytoplasmic domain of the b subunit (residues 26 -156, b cyt ) and other membrane peripheral subunits including ␣, , ␥, ␦, ⑀, and putative cytoplasmic domains of the a subunit were analyzed with the yeast two-hybrid system and in vitro reconstitution of ATPase from the purified subunits as well. Only the combination of b cyt fused to the activation domain of the yeast GAL-4, and ␦ subunit fused to the DNA binding domain resulted in the strong expression of the -galactosidase reporter gene, suggesting a specific interaction of these subunits. Expression of b cyt fused to glutathione S-transferase (GST) together with the ␦ subunit in Escherichia coli resulted in the overproduction of these subunits in soluble form, whereas expression of the GST-b cyt fusion alone had no such effect, indicating that GST-b cyt was protected by the co-expressed ␦ subunit from proteolytic attack in the cell. These results indicated that the membrane peripheral domain of b subunit stably interacted with the ␦ subunit in the cell. The affinity purified GST-b cyt did not contain significant amounts of ␦, suggesting that the interaction of these subunits was relatively weak. Binding of these subunits observed in a direct binding assay significantly supported the capability of binding of the subunits. The ATPase activity was reconstituted from the purified b cyt together with ␣, , ␥, ␦, and ⑀, or with the same combination except ⑀. Specific elution of the ATPase activity from glutathione affinity column with the addition of glutathione after reconstitution demonstrated that the reconstituted ATPase formed a complex. The result indicated that interaction of b and ␦ was stabilized by F 1 subunits other than ⑀ and also suggested that b-␦ interaction was important for F 1 -F 0 interaction.