Assembly of the adenovirus (Ad) homotrimeric fiber protein is nucleated by its C-terminal knob domain, which itself can trimerize when expressed as a recombinant protein fragment. The noninterlocked, globular structure of subunits in the knob trimer implies that trimers assemble from prefolded monomers through a dimer intermediate, but these intermediates have not been observed and the mechanism of assembly therefore remains uncharacterized. Here we report that expression of the Ad serotype 2 (Ad2) knob was toxic for thiÀ strains of Escherichia coli, which are defective in de novo synthesis of thiamine (vitamin B1). Ad2 knob trimers isolated from a thi+ strain copurified through multiple chromatography steps with a small molecule of mass equivalent to that of thiamine diphosphate (ThDP). Mutant analysis did not implicate any specific site for ThDP binding. Our results suggest that ThDP may associate with assembly intermediates and become trapped in assembled trimers, possibly within one of several large cavities that are partially solvent-accessible or buried completely within the trimer interior.Keywords: oligomeric proteins; assembly; chemical chaperone; subunit interface; adenovirus fiber knob; thiamine diphosphate Supplemental material: see www.proteinscience.org Oligomeric proteins can assemble from either identical or different polypeptide subunits and fall into two classes depending on whether their subunits are interlocked or globular (Goodsell and Olson 2000). While the interlocking of subunits must result from simultaneous folding and assembly, globular subunits potentially can fold and assemble in separate, sequential steps. Isolated globular subunits would have exposed surfaces that become buried in the subunit interfaces of the assembled oligomer, and these surfaces could require stabilization to block nonspecific interactions. Molecular chaperones generally do not interact with folded protein species (Bukau et al. 2000); therefore, other factors and alternative mechanisms may be required to stabilize globular subunits prior to their assembly into oligomeric protein species. The mechanisms for assembly of this class of oligomeric proteins are not well understood.The underlying molecular symmetry of oligomeric proteins is frequently exploited by viruses to build symmetrical capsid structures, and investigation of these systems could provide useful insights into general mechanisms for assembly of oligomeric proteins. The facets of the adenovirus iscosahedral capsid, for example, are built primarily from hexons (San Martin and Burnett 2003), homotrimeric proteins with interlocking subunits (Athappilly et al. 1994). Earlier genetic analysis indicated that a virally encoded molecular chaperone (100K 1 Present address: Enzo Life Sciences Inc., Farmingdale, NY 11735, USA.Reprint requests to: Paul Freimuth, Biology Department, Brookhaven National Laboratory, Building 463, 50 Bell Avenue, Upton, NY 11973, USA; e-mail: freimuth@bnl.gov; fax: (631) 344-3407.Article published online ahead of print. Arti...