Strong anticorrelation between the fluorescence emission of different emitters is observed by employing single-molecule fluorescence spectroscopy on photosystem I at cryogenic temperatures. This anticorrelation demonstrates a time-dependent interaction between pigments participating in the exciton transfer chain, implying that uniquely defined energy transfer pathways within the complex do not exist. Fluctuations of the chromophores themselves or their immediate protein surroundings induce changes in their site energy, and, as a consequence, these fluctuations change the coupling within the excitation transfer pathways. The time scales of the site energy fluctuations of the individual emitters do not meet the time scales of the observed correlated emission behavior. Therefore, the emitters must be fed individually by energetically higher lying states, causing the observed intensity variations. This phenomenon is shown for photosystem I pigmentprotein complexes from 2 different cyanobacteria (Thermosynechococcus elongatus and Synechocystis sp. PCC 6803) with strongly different spectral properties underlining the general character of the findings. The variability of energy transfer pathways might play a key role in the extreme robustness of light-harvesting systems in general.exciton transfer ͉ FRET ͉ light harvesting ͉ photosynthesis ͉ single-molecule T he complex structural dynamics of proteins as a result of their combination of properties resembling, in part, the crystalline, the glassy, and the liquid state of matter is a prerequisite for protein function (1, 2). The picture of transitions between hierarchically ordered minima in a multidimensional configuration energy landscape (3) has emerged from the pioneering experiments of Frauenfelder et al. (4) as well as molecular dynamics simulations (5, 6). Local minima correspond to conformational substates (CS) separated by energy barriers into distinct tiers. Protein-embedded chromophore cofactors are ideal reporters for transitions between CS because of the susceptibility of their electronic transition energies on the specific conformation of their protein environment (2). The changes of the electronic transition energies (site energies) of individual chromophores are accessible by single-molecule spectroscopy (SMS) (7) on the single-protein level (8)(9)(10)(11)(12)(13)(14).The transition rates between different CS in proteins are spread out over an extremely wide range of time scales. As a consequence, for room temperature single-molecule experiments on pigment-protein complexes only transitions between CS of higher tiers occurring slower than the presently achievable time resolution of Ϸ0.1 s Ϫ1 can be monitored directly (14, 15). There, the individual spectra approximately resemble ensembleaveraged spectra with characteristic fluctuations in their width and specific position (13). Lowering the temperature slows down the transitions between CS in high tiers beyond realistic durations of the experiment, and transitions involving lower tiers move into the exper...