The growth of InGaN on Si in the regime slightly above the onset of In desorption naturally leads to the formation of core−shell InGaN nanowires (NWs) by plasma-assisted molecular beam epitaxy. The onset of In desorption is gradual and depends on the growth temperature, N flux, and metal fluxes. The dependence on the growth temperature has been reported before; here, the dependence on the N flux or N/metal flux ratio is the topic. Based on the analysis of InGaN layers directly grown on Si (111) substrates without substrate rotation, we present a detailed correlation of the morphological, structural, and optical properties close to the transition from metal-rich to N-rich growth conditions due to changing N flux across the wafer with very high precision. The different regions are characterized by scanning electron microscopy, energy-dispersive X-ray spectroscopy, atomic force microscopy, X-ray diffraction, and photoluminescence spectroscopy. In desorption for the In-poor InGaN NW shell formation is reduced by increasing N flux, while the In-rich core is generally much less affected by In desorption with a stable, high In content, confirming the previous growth model. Good optical quality requires a N flux a few percent higher than the metal flux, highlighting the importance of the transition from metal-rich to N-rich growth as a crucial reference for realizing high-quality core−shell InGaN NWs.