Background:
TLP genes are the members of a conserved pathogenesis-related protein 5 (PR-5) gene family. They play role in abiotic stress response, hormone signaling, cell death, cold tolerance, enzyme inactivation, fruit maturation and seed germination. In this study, we characterized the TLP gene family in barley with specific emphasis on germination and malting.
Results: We identified 19 TLP genes from the reference genome of Hordeum vulgare L. cv. Morex and 37, 28 and 35 TLP genes from the Oryza sativa, Brachypodium distachyon and Sorghum bicolor genome respectively. Comparative phylogenetic analysis and thaumatin domain organization of TLPs using the conserved region classified the TLP family into nine groups. Data revealed that localized gene duplications contributed to the expansion of the TLP gene family in cereals with diverse exon/intron structures. In the barley genome, most HvTLPs were localized on chromosome 5H. The differential spatiotemporal expression pattern of HvTLP genes in barley indicate that TLPs have been expressed predominantly in the embryo, developing grains, root and shoot tissues. Additionally, transcript abundance of HvTLP genes was measured between 16 hrs. to 96 hrs. of grain germination. Differential expression of HvTLP14, HvTLP17 and HvTLP18 in the malting variety (Morex), as compared to the feed variety (Steptoe) at different stages of seed germination indicates their possible role in malting.
Conclusion: Barley genome contains higher number (19) of TLP genes as previously thought (8). This study provides a description of the TLP gene family in barley and their differential expression between 16-96 hrs. of germination. The results indicate their possible involvement in the malting process.
Keywords: Cereals, Barley, Thaumatin like-proteins, Phylogenetics, Expression analysis