K v 7 channels are enriched at the axonal plasma membrane where their voltage-dependent potassium currents suppress neuronal excitability. Mutations in K v 7.2 and K v 7.3 subunits cause epileptic encephalopathy (EE), yet the underlying pathogenetic mechanism is unclear. Here, we used novel statistical algorithms and structural modeling to identify EE mutation hotspots in key functional domains of K v 7.2 including voltage sensing S4, the pore loop and S6 in the pore domain, and intracellular calmodulin-binding helix B and helix B-C linker. Characterization of selected EE mutations from these hotspots revealed that L203P at S4 induces a large depolarizing shift in voltage dependence of K v 7.2 channels and L268F at the pore decreases their current densities. While L268F severely reduces expression of heteromeric channels in hippocampal neurons without affecting internalization, K552T and R553L mutations at distal helix B decrease calmodulin-binding and axonal enrichment. Importantly, L268F, K552T, and R553L mutations disrupt current potentiation by increasing phosphatidylinositol 4,5-bisphosphate (PIP 2), and our molecular dynamics simulation suggests PIP 2 interaction with these residues. Together, these findings demonstrate that each EE variant causes a unique combination of defects in K v 7 channel function and neuronal expression, and suggest a critical need for both prediction algorithms and experimental interrogations to understand pathophysiology of K v 7-associated EE. Epilepsy is the second most prominent neurological disease (www.epilepsy.com), in which excessive electrical activity within networks of neurons in the brain manifests clinically as recurrent unprovoked seizures 1. Recent discoveries of epilepsy-related genes in multiple laboratories and through large consortia have revealed a diverse array of proteins that may contribute to epileptogenesis 1,2. Among these proteins, neuronal KCNQ/K v 7 potassium (K +) channels have been implicated in epilepsy since mutations in the principle subunits, KCNQ2/K v 7.2 and KCNQ3/K v 7.3, cause Benign Familial Neonatal Epilepsy (BFNE [MIM: 121200]) and Epileptic Encephalopathy (EE [MIM: 613720]) (RIKEE database www.rikee.org). Neuronal K v 7 channels are mainly composed of heterotetramers of K v 7.2 and K v 7.3 3 , which show overlapping distribution in the hippocampus and cortex 4. They generate slowly activating and non-inactivating voltage-dependent K + currents that contribute to resting membrane potential, prevent repetitive and burst firing of action potentials (APs), and modulate AP threshold 3,5-7 .They are enriched at the plasma membrane of axonal initial segments (AIS) and distal axons 8,9 , where APs initiate and propagate 10. Membrane phosphatidylinositol-4,5-bisphosphate (PIP 2) is required for K v 7 channels to open 3 , although its exact binding sites in K v 7.2 and K v 7.3