Denoising computed tomography (CT) medical images is crucial in preserving information and restoring images contaminated with noise. Standard filters have extensively been used for noise removal and fine details’ preservation. During the transmission of medical images, noise degrades the visibility of anatomical structures and subtle abnormalities, making it difficult for radiologists to accurately diagnose and interpret medical conditions. In recent studies, an optimum denoising filter using the wavelet threshold and deep-CNN was used to eliminate Gaussian noise in CT images using the image quality index (IQI) and peak signal-to-noise ratio (PSNR). Although the results were better than those with traditional techniques, the performance resulted in a loss of clarity and fine details’ preservation that rendered the CT images unsuitable. To address these challenges, this paper focuses on eliminating noise in CT scan images corrupted with additive Gaussian blur noise (AGBN) using an ensemble approach that integrates anisotropic Gaussian filter (AGF) and wavelet transform with a deep learning denoising convolutional neural network (DnCNN). First, the noisy image is denoised by AGF and Haar wavelet transform as preprocessing operations to eliminate AGBN. The DnCNN is then combined with AGF and wavelet for post-processing operation to eliminate the rest of the noises. Specifically, we used AGF due to its adaptability to edge orientation and directional information, which prevents blurring along edges for non-uniform noise distribution. Denoised images are evaluated using PSNR, mean squared error (MSE), and the structural similarity index measure (SSIM). Results revealed that the average PSNR value of the proposed ensemble approach is 28.28, and the average computational time is 0.01666 s. The implication is that the MSE between the original and reconstructed images is very low, implying that the image is restored correctly. Since the SSIM values are between 0 and 1.0, 1.0 perfectly matches the reconstructed image with the original image. In addition, the SSIM values at 1.0 or near 1.0 implicitly reveal a remarkable structural similarity between the denoised CT image and the original image. Compared to other techniques, the proposed ensemble approach has demonstrated exceptional performance in maintaining the quality of the image and fine details’ preservation.