This work aims to treat olive mill wastewater (OMWW) by infiltration percolation in different columns containing filtration sand, granular activated carbon, and lime, and thus followed by biological treatment using the soil microorganisms to the treatment that will give the best results. The optimum removal efficiency was obtained using granular activated carbon column mixed with 15% of lime with percentages removal of 39.33, 60.28, 53.17 and 88.74% for biological oxygen demand (BOD5), chemical oxygen demand (COD), polyphenols and suspended matter respectively. Aerobic treatment 30 days of OMWW obtained from the column of activated carbon mixed with 15% of lime, neutralized and diluted 15 times with distilled water was investigated. The results showed a significant percentage reduction of 79.78, 69.43, and 60.67%, respectively, for BOD5, COD, and polyphenols. The global removal percentages after the two successive treatments were 87.86% for COD, 87.39% for BOD5 and 81.59% for polyphenols compounds. Fourier Transformed Infrared spectroscopy analysis of crude OMWW, infiltrated percolated and biologically treated, showed a difference between the spectra that manifests by the reduction of the spectrum intensity bands after each treatment stage, which confirmed the analytical results. Soil microorganisms have shown their biodegradation efficiency of organic matter and polyphenols of these much-polluted effluents under aerobic conditions. The results indicated that the pretreatment of raw olive mill wastewater could be realized before biological treatment to obtain a satisfactory reduction.