An antisense construct targeting the C 4 isoform of NADP-malic enzyme (ME), the primary enzyme decarboxylating malate in bundle sheath cells to supply CO 2 to Rubisco, was used to transform the dicot Flaveria bidentis. Transgenic plants (a-NADP-ME) exhibited a 34% to 75% reduction in NADP-ME activity relative to the wild type with no visible growth phenotype. We characterized the effect of reducing NADP-ME on photosynthesis by measuring in vitro photosynthetic enzyme activity, gas exchange, and real-time carbon isotope discrimination (D). In a-NADP-ME plants with less than 40% of wild-type NADP-ME activity, CO 2 assimilation rates at high intercellular CO 2 were significantly reduced, whereas the in vitro activities of both phosphoenolpyruvate carboxylase and Rubisco were increased. D measured concurrently with gas exchange in these plants showed a lower D and thus a lower calculated leakiness of CO 2 (the ratio of CO 2 leak rate from the bundle sheath to the rate of CO 2 supply). Comparative measurements on antisense Rubisco small subunit F. bidentis plants showed the opposite effect of increased D and leakiness. We use these measurements to estimate the C 4 cycle rate, bundle sheath leak rate, and bundle sheath CO 2 concentration. The comparison of a-NADP-ME and antisense Rubisco small subunit demonstrates that the coordination of the C 3 and C 4 cycles that exist during environmental perturbations by light and CO 2 can be disrupted through transgenic manipulations. Furthermore, our results suggest that the efficiency of the C 4 pathway could potentially be improved through a reduction in C 4 cycle activity or increased C 3 cycle activity.