Zooplankton community composition of high mountain lakes in the Tatra Mts., the Alps in North Tyrol, and Scotland: relationship to pH, depth, organic carbon, and chlorophyll-a concentration. -Acta Mus. Siles. Sci. Natur., 64: 175-189, 2015.Abstract: The European EMERGE (European Mountain lake Ecosystems: Regionalisation, diaGnostic & socio-economic Evaluation) project was a survey of high mountain lakes (above treeline) across Europe using unified methods of sampling and analysis. The sampling was carried out in summer or autumn 2000, and comprised biological samples, and samples for chemical analysis. Data from three lake districts are used in this paper: the Tatra Mts. in Slovakia and Poland (45 lakes), the Alps in Tyrol in Austria (22 lakes), and Scotland (30 lakes). As it is shown by multiple regression analysis, DTOC (dissolved or total organic carbon) is the key variable for most groups of zooplankton. With increasing DTOC and mostly with chlorophyll-a decreasing, pH increasing and depth decreasing, macrofitrators with coarse filter meshes are replaced by microfiltrators with fine filter meshes. Higher DTOC may increase bacterioplankton production and advantage species able to consume bacteria (microfiltrators). Other zooplankton species also differ in their preference for DTOC, chlorophyll-a, pH and depth, but DTOC being positively correlated with chlorophyll-a and pH positively correlated with depth. It may be caused by their different preference for food quality in terms of C:P ratio.