Crystallographic studies of the intermediate states between unliganded and fully liganded hemoglobin (Hb) have revealed a large range of subtle but functionally important structural differences. Only one T state has been reported, whereas three other quaternary states (the R state, B state, and R2 or Y state) for liganded Hb have been characterized; other studies have defined liganded Hbs that are intermediate between the T and R states. The high-salt crystal structure of bovine carbonmonoxy (CO bovine) Hb has been determined at a resolution of 2.1 Å and is described here. A detailed comparison with other crystallographically solved Hb forms (T, R, R2 or Y) shows that the quaternary structure of CO bovine Hb closely resembles R state Hb. However, our analysis of these structures has identified several important differences between CO bovine Hb and R state Hb. Compared with the R state structures, the -subunit N-terminal region has shifted closer to the central water cavity in CO bovine Hb. In addition, both the ␣-and -subunits in CO bovine Hb have more constrained heme environments that appear to be intermediate between the T and R states. Moreover, the distal pocket of the -subunit heme in CO bovine Hb shows significantly closer interaction between the bound CO ligand and the Hb distal residues Val 63(E11) and His 63(E7). The constrained heme groups and the increased steric contact involving the CO ligand and the distal heme residues relative to human Hb may explain in part the low intrinsic oxygen affinity of bovine Hb.Keywords: X-ray crystal structure; bovine; hemoglobin; R state; oxygen affinityThe human adult hemoglobin (HbA) tetramer consists of two ␣-(141 amino acid residues) and two -(146 amino acid residues) subunits. The ␣11 and ␣22 dimers are related by a molecular twofold axis of symmetry or molecular dyad that intersects the central water cavity. Perutz (1970Perutz ( , 1972 and Baldwin and Chothia (1979) elucidated at atomic resolution the structures of the T (tense) and R (relaxed) forms embodied in the two-state MWC model (Monod et al. 1965), which assumes that the T and the R states switch allosterically without intermediate states. A ligand-bound Hb known as R2 (Silva et al. 1992) or Y (Smith et al. 1991Smith and Simmons 1994) has been proposed as an intermediate between the T and R structures. However, further analysis has shown that R2 (Y) is not an intermediate in the T to R transition, but rather is another relaxed end-state structure (Janin and Wodak 1993). Srinivasan and Rose (1994) have further suggested that R2 (Y) may be the authentic liganded conformation and that the classical R structure actually lies in the pathway from T to R2 (Y) transition. Another liganded Hb, termed B (Kroeger and Kundrot 1997), also has been discovered recently. This is a mutant Hb with Asn108 mutated to a Lys, and the ␣-subunits covalently bound together by glycine. Schuma-