Sodium and potassium-exchanging adenosine triphosphatase (Na,K-ATPase) in the kidney is associated with the ␥ subunit (␥, FXYD2), a single-span membrane protein that modulates ATPase properties. Rat and human ␥ occur in two splice variants, ␥a and ␥b, with different N termini. Here we investigated their structural heterogeneity and functional effects on Na,K-ATPase properties. Both forms were post-translationally modified during in vitro translation with microsomes, indicating that there are four possible forms of ␥. Site-directed mutagenesis revealed Thr 2 and Ser 5 as potential sites for post-translational modification. Similar modification can occur in cells, with consequences for Na,K-ATPase properties. We showed previously that stable transfection of ␥a into NRK-52E cells resulted in reduction of apparent affinities for Na ؉ and K ؉ . Individual clones differed in ␥ post-translational modification, however, and the effect on Na ؉ affinity was absent in clones with full modification. Here, transfection of ␥b also resulted in clones with or without post-translational modification. Both groups showed a reduction in Na ؉ affinity, but modification was required for the effect on K ؉ affinity. There were minor increases in ATP affinity. The physiological importance of the reduction in Na ؉ affinity was shown by the slower growth of ␥a, ␥b, and ␥b transfectants in culture. The differential influence of the four structural variants of ␥ on affinities of the Na,KATPase for Na ؉ and K ؉ , together with our previous finding of different distributions of ␥a and ␥b along the rat nephron, suggests a highly specific mode of regulation of sodium pump properties in kidney.