Objective. To determine novel genes regulated by tumor necrosis factor ␣ (TNF␣) signaling in primary rheumatoid arthritis synovial fibroblasts (RASFs).Methods. Oligonucleotide microarrays were used to measure gene expression levels in 6 independent replicate samples of RASFs. RASFs were transfected for 18 hours with AdIB-dominant negative (AdIB-DN) (n ؍ 3) or with control AdTet expressing the reverse tetracycline trans-activator (n ؍ 3). The cells were stimulated for 3 hours with TNF␣, and total RNA was prepared. Several novel parametric and nonparametric methods were used to rank genes in terms of the magnitude and significance of intergroup differences. Microarray expression differences were confirmed by real-time quantitative reverse transcription-polymerase chain reaction. Small interfering RNA (siRNA) was used to specifically down-modulate microarrayidentified genes to demonstrate their role in the promotion of apoptosis, proliferation, or matrix metalloproteinase (MMP) expression. Rheumatoid arthritis (RA) is associated with inflammation of the synovium and development of RA synovial fibroblasts (RASFs) that undergo hyperplasia and invade cartilage and bone (1). RASFs exhibit an increased ability to enter into the cell cycle and, therefore, to undergo hyperplasia (2,3), and they show a decreased ability to undergo apoptosis (4,5). RASFs produce proinflammatory cytokines, such as interleukin-1 (IL-1) and tumor necrosis factor ␣ (TNF␣), which provide further stimulation for the inflammation in RA (6), as well as enzymes, including stromelysin and collagenase, which are capable of invading cartilage and bone (7,8). Thus, RASFs are unique, and their altered properties of growth and production of proinflammatory and matrix-degrading proteins are central to the erosion of cartilage and bone that is seen in RA.
Results. Blocking of NF-B byThe cytokine TNF␣ is central to the development and continued growth and invasion of RASFs (9).