The PPM family of Ser/Thr protein phosphatases have recently been shown to down-regulate the stress response pathways in eukaryotes. Within the stress pathway, key signaling kinases, which are activated by protein phosphorylation, have been proposed as the in vivo substrates of PP2C, the prototypical member of the PPM family. Although it is known that these phosphatases require metal cations for activity, the molecular details of these important reactions have not been established. Therefore, here we report a detailed biochemical study to elucidate the kinetic and chemical mechanism of PP2C␣. Steady-state kinetic and product inhibition studies revealed that PP2C␣ employs an ordered sequential mechanism, where the metal cations bind before phosphorylated substrate, and phosphate is the last product to be released. The metal-dependent activity of PP2C (as reflected in k cat and k cat /K m ), indicated that Fe 2؉ was 1000-fold better than Mg
2؉. The pH rate profiles revealed two ionizations critical for catalytic activity. An enzyme ionization with a pK a value of 7 must be unprotonated for catalysis, and an enzyme ionization with a pK a of 9 must be protonated for substrate binding. Brö nsted analysis of substrate leaving group pK a indicated that phosphomonoester hydrolysis is rate-limiting at pH 7.0, but not at pH 8.5 where a common step independent of the nature of the substrate and alcohol product limits turnover (k cat ). Rapid reaction kinetics between phosphomonoester and PP2C yielded exponential "bursts" of product formation, consistent with phosphate release being the slow catalytic step at pH 8.5. Dephosphorylation of synthetic phosphopeptides corresponding to several protein kinases revealed that PP2C displays a strong preference for diphosphorylated peptides in which the phosphorylated residues are in close proximity.
Protein phosphatases (PP)1 catalyze the dephosphorylation of proteins containing phosphoserine/phosphothreonine and are divided into two distinct gene families, designated PPP and PPM (1). Although both PP families require divalent cations for activity, the PPM family is often distinguished by its Mg 2ϩ and Mn 2ϩ dependence. PP2C is the defining member of the PPM family. PP2C homologues have been identified in bacteria, plants, yeast, and mammals and appear to have a conserved role in negatively regulating stress response. PP2C was shown to be a negative regulator of two mitogen-activated protein kinase (MAPK) pathways involved in stress response, the p38 and c-Jun N-terminal kinase pathways. Like other MAPK pathways, these consist of a MAPK, a MAPK kinase (MAPKK), and a MAPKK kinase (MAPKKK) (2). MAPK is phosphorylated on conserved threonine and tyrosine residues by the activated MAPKK. The MAPKK is activated by phosphorylation on conserved threonine and/or serine residues by the MAPKKK. The stress response pathways are activated by proinflammatory cytokines, osmotic shock, oxidative stress, UV irradiation, and heat shock (3, 4). PP2C is thought to directly dephosphorylate and inactivate...