DNA damage activates cell cycle checkpoint signaling pathways that coordinate cell cycle arrest and DNA repair. Three of the proteins involved in checkpoint signaling, Rad1, Hus1, and Rad9, have been shown to interact by immunoprecipitation and yeast two-hybrid studies. However, it is not known how these proteins interact and assemble into a complex. In the present study we demonstrated that in human cells all the hRad9 and hHus1 and approximately one-half of the cellular pool of hRad1 interacted as a stable, biochemically discrete complex, with an apparent molecular mass of 160 kDa. This complex was reconstituted by co-expression of all three recombinant proteins in a heterologous system, and the reconstituted complex exhibited identical chromatographic behavior as the endogenous complex. Interaction studies using differentially tagged proteins demonstrated that the proteins did not self-multimerize. Rather, each protein had a binding site for the other two partners, with the N terminus of hRad9 interacting with hRad1, the N terminus of hRad1 interacting with hHus1, and the N terminus of hHus1 interacting with the C terminus of hRad9's predicted PCNA-like region. Collectively, these analyses suggest a model of how these three proteins assemble to form a functional checkpoint complex, which we dubbed the 9-1-1 complex.DNA damage provokes multiple cellular responses, including the activation of DNA damage checkpoint signaling pathways, which arrest cell cycle progression in G 1 , S, and G 2 /M and possibly coordinate repair of the damage. Loss of the DNA damage checkpoint response leads to increased sensitivity to DNA-damaging agents, demonstrating that these pathways are critical for efficient recovery from DNA damage (reviewed in Refs. 1-6). The components of the checkpoint signaling pathways were initially identified by genetic analyses in the yeasts, Schizosaccharomyces pombe and Saccharomyces cerevisiae, and recent studies demonstrated that the checkpoint genes are conserved between yeasts and humans (7-23). Collectively, these studies have given rise to a conserved model in which DNA damage activates members of the ATM (ataxia telangiectasia-mutated) family of phosphatidylinositol 3-kinase-related kinases. These protein kinases are then required to activate the downstream protein kinases Chk1 and Chk2 (20,(22)(23)(24)(25), which regulate cell cycle arrest and possibly other DNA damage-induced responses.Despite the recent progress in the dissection of the downstream protein kinase-mediated portions of the checkpoint signaling pathways, yeast genetic studies demonstrated that additional checkpoint genes also regulate the DNA damage response (reviewed in Refs. 2-6). For example, in S. pombe spRad1, spHus1, spRad9, and spRad17 (using S. pombe nomenclature) are all essential for DNA damage-induced cell cycle arrest and activation of the spChk1 protein kinase after DNA damage (4 -6). Thus, these results suggest that Rad1, Hus1, Rad9, and Rad17 function upstream of Chk1 activation in the DNA damage-signaling pathw...