GA binding protein (GABP) is a ubiquitously expressed Ets family transcription factor that consists of two subunits, GABP␣ and GABP. GABP␣ binds to DNA, and GABP heterodimerizes with GABP␣ and possesses the ability to transactivate target genes. Our previous studies using GABP␣-deficient mice revealed that GABP␣ is required for the development of both T and B cells. Two splice variants of GABP are generated from the Gabpb1 locus and differ in their carboxy-terminal lengths and sequences. The longer isoform (GABP1L) can homodimerize and thus form ␣ 2  2 tetramers depending on the gene context, whereas the shorter isoform (GABP1S) cannot. In this study, we generated mice that are deficient in GABP1L but that retain the expression of GABP1S. Surprisingly, GABP1L ؊/؊ mice had normal T-and B-cell development, and mature T and B cells showed normal responses to various stimuli. In contrast, targeting both GABP1L and GABP1S resulted in early embryonic lethality. Because of its incapability of forming homodimers, GABP1S has been suspected to have a dominant negative role in regulating GABP target genes. Our findings argue against such a possibility and rather suggest that GABP1S has a critical role in maintaining the transcriptional activity of the GABP␣/ complex.Ets family transcription factors have diverse functions in development, differentiation, apoptosis, and oncogenesis (15, 31). More than 30 Ets factors have been described, and all of them contain a conserved DNA binding Ets domain of approximately 85 amino acids in length. The Ets domain assumes a winged helix-loop-helix configuration and binds preferentially to a purine-rich consensus DNA sequence containing GGAA/T. GA binding protein (GABP) is the only Ets factor that functions as obligate multimeric proteins and consists of two unrelated subunits, GABP␣ and GABP (26). GABP␣ harbors the Ets domain close to its C terminus and is thus responsible for DNA binding. GABP cannot bind DNA but has transactivation activities. The interaction of these two subunits is mediated by the C terminus of GABP␣, including the ETS domain, and the ankyrin repeats at the N terminus of GABP.GABP was originally identified in studies of viral gene transcription (36, 37), but it is now known to regulate genes that control many basic cellular functions such as cellular respiration in mitochondria (30), protein components of ribosomes (10), and cell cycle progression (14, 32). A recent study using GABP␣-deficient fibroblasts demonstrated that GABP␣ is required for reentry into the cell cycle by regulating the expression of genes that are required for DNA synthesis (such as thymidylate synthase) and the degradation of cyclin-dependent kinase inhibitors (such as S-phase kinase-associated protein) (41). The observation that the inactivation of both Gabpa alleles resulted in death prior to implantation highlights its essential roles for early embryogenesis (25). In addition to these basic cellular functions, GABP regulates tissue-specific target genes, such as those encodi...