Vacuolar-type HThe slower k on ATP than k on ADP and strong Mg-ADP inhibition may contribute to prevent wasteful consumption of ATP under in vivo conditions when the proton motive force collapses.
Vacuolar-type Hϩ -ATPases (V-ATPases) 2 are found in a wide range of organisms. V-ATPase in eukaryotes functions as an ATP hydrolysis-driven proton pump that carries out acidification of cellular compartments, such as lysosomes, and extracellular fluid in the case of renal acidification, bone resorption, and tumor metastasis (1). A family of V-ATPases is also found in archaea and some eubacteria (the prokaryotic V-ATPase family) (2-7).3 A major role of the V-ATPase in prokaryotes is to produce ATP, a function performed by F 0 F 1 in eukaryotes and most eubacteria. V-ATPase and F 0 F 1 function by a rotary ATP synthase/ATPase mechanism (1). The hydrophilic domain of both V-ATPase and F 0 F 1 (called V 1 and F 1 , respectively) is responsible for ATP synthesis/hydrolysis and is connected via the central rotor and peripheral stator stalks to the transmembrane domain (V 0 and F 0 , respectively), which functions as an ion channel (1, 8). Although composition and arrangement of subunits differ considerably between V-ATPase and F 0 F 1 , they seem to share a common rotary catalysis mechanism, catalyzing the interconversion of the energy from proton translocation across membranes and the energy of ATP synthesis/hydrolysis through rotation of the central rotor subunits (8). It is thought that rotary catalysis is basically reversible (8, 9). When the transmembrane electrochemical gradient of protons (proton motive force (pmf)) is of sufficient strength, pmf drives rotation of a central rotor shaft to synthesize ATP. In contrast, when pmf is weak, the enzymes become an ATPdriven proton pump that rotates in the opposite direction driven by the energy released by ATP hydrolysis. Indeed, it has been shown that yeast V-ATPase, which functions as a proton pump in vivo, is able to catalyze ATP synthesis when exposed to an electrochemical gradient in vitro (10). In addition the F 1 portion of F 0 F 1 can synthesize ATP when the rotor shaft is forced to rotate in a direction opposite that of ATP hydrolysis (11,12). It is well known that the ATP hydrolysis reaction catalyzed by both V-ATPase and F 0 F 1 is highly regulated by a number of different mechanisms to prevent wasteful ATP consumption (1, 13). One such mechanism is Mg-ADP inhibition, whereby Mg-ADP binds into the catalytic site of the V 1 and F 1 domains and thus inhibits ATP hydrolysis (14 -17). Some enzymes appear to be inhibited irreversibly by these mechanisms (18,19).V-ATPase from the thermophilic bacterium, Thermus thermophilus, has been extensively investigated by biochemical and biophysical methods. Subunit rotation coupled to ATP hydrolysis of the V 1 portion has been visualized using a single mole-