The genetic potential of ungulates of the Arctic zone of the Russian Federation is rich and diverse, but requires modern research. The use of genetic systems makes it possible to study the genome of animals, determine the state of the genetic diversity of the species, suggest reasonable ways to maintain the level of heterozygosity in domesticated animals, purposefully obtain individuals that are necessary for humans. The analysis of the above-described gene pools of their structure is interesting both for modern breeding and environmental genetics, and may be in demand in the future when planning the development of animal husbandry in the Arctic zone for decades to come. The unique adaptive capabilities of animals to the harsh conditions of the Far North open up wide opportunities for their rational use. Reindeer, musk ox and snow sheep are the most important components of high-latitude ecosystems, in which other ungulate species can practically not live, so they are of great scientific and practical value in preserving agro-diversity in the Arctic zone of the Russian Federation.