Thrombolites are a common component of carbonate buildups throughout the Phanerozoic. Although they are usually described as microbialites with an internally clotted texture, a wide range of thrombolite textures have been observed and attributed to diverse processes, leading to difficulty interpreting thrombolites as a group. Interpreting thrombolitic textures in terms of ancient ecosystems requires understanding of diverse processes, specifically those due to microbial growth and metazoan activity. Many of these processes are reflected in thrombolites in the Cambrian Carrara, Bonanza King, Highland Peak and Nopah formations, Great Basin, California, USA; they comprise eight thrombolite classes based on variable arrangements and combinations of depositional and diagenetic components. Four thrombolite classes (hemispherical microdigitate, bushy, coalescent columnar and massive fenestrated) contain distinct mesoscale microbial growth structures that can be distinguished from surrounding detrital sediments and diagenetic features. By contrast, mottled thrombolites have mesostructures that dominantly reflect post‐depositional processes, including bioturbation. Mottled thrombolites are not bioturbated stromatolites, but rather formed from disruption of an originally clotted growth structure. Three thrombolite classes (arborescent digitate, amoeboid and massive) contain more cryptic textures. All eight of the thrombolite classes in this study formed in similar Cambrian depositional environments (marine passive margin). Overall, this suite of thrombolites demonstrates that thrombolites are diverse, in both internal fabrics and origin, and that clotted and patchy microbialite fabrics form from a range of processes. The diversity of textures and their origins demonstrate that thrombolites should not be used to interpret a particular ecological, evolutionary or environmental shift without first identifying the microbial growth structure and distinguishing it from other depositional, post‐depositional and diagenetic components. Furthermore, thrombolites are fundamentally different from stromatolites and dendrolites in which the laminae and dendroids reflect a primary growth structure, because clotted textures in thrombolites do not always reflect a primary microbial growth structure.