The knowledge of geomorphodynamic aspects is crucial for understanding marine and coastal processes/dynamics as well as for characterizing coastal environments heavily affected by anthropogenic activities. To provide a framework of analysis that can be applied in a consistent way for the geo-environmental characterization of highly contaminated coastal sites, in this paper a set of operational guidelines is proposed. Special attention is given to the role of geomorphological-based surveys and analyses in defining (i) the site-specific geological model of the investigated site, (ii) the anthropogenic impacts on marine and coastal sediments, (iii) the expected morphodynamic variations induced by climate change and anthropogenic interventions, (iv) tailored dissemination activities and community engagement plans. Then, an evaluation of the state of the art of activities already performed for the characterization of the coastal contaminated sites located in the Apulia region (southern Italy) is provided. The outcomes of this research are also provided in the form of infographics to favor their dissemination among communities and stakeholders.