A uniparentally inherited 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU)-resistant mutant of Chiamydomonas reinhardii, Dr2, which has a resistance mechanism of the type defined as 'primary,' has been isolated. In vitro Hill reactions catalyzed by isolated thylakoid membranes reveal a reduced apparent affinity of the thylakoids for DCMU. These changes in membrane properties quantitatively account for the resistance of mutant Dr2 to herbicide inhibition of growth. There are several chemically distinct classes of herbicides which inhibit photosynthesis by blocking electron transport away from the reduced PSII acceptor, Q (20). DCMU, or diuron, is a potent member of the urea class, and atrazine is a potent and widely used triazine. In addition to having nearly identical physiological effects, these various herbicides show competitive binding to the same site on the thylakoid membrane (29). All of the herbicides share the common structural feature of a sp2 hybrid orbital carbon bonded to a nitrogen atom (9). At the same time, studies of substituent effects on the binding of different chemical classes show that one class may have important contacts with the binding site which are in a different spatial domain from some of the contacts which are important to a different class. Thus, it seems that each chemical class of these herbicides shares a portion of its binding site with all of the others, but that a portion is specific for that class (2).The derivative of atrazine which retains competitive binding to this site becomes covalently bonded to a 32,000 D thylakoid membrane polypeptide when the complex is UV irradiated (6). The reaction of this protein is dependent upon specific binding at the site, since it cannot be labeled in thylakoids from an atrazine-resistant biotype of Amaranthus which do not bind atrazine (23). Thus, this 32,000 D polypeptide is either part of or close to the binding site, but it is not known whether this part is shared with other herbicides or whether it interacts uniquely with triazines. Mattoo et al. (16) have shown that a 32,000 D polypeptide of Spirodela thylakoids, which is ordinarily quite sensitive to trypsin treatment of the membranes, is rendered resistant to digestion upon DCMU binding. If this protein is homologous with the azido-atrazine labeled protein, then it is apparent that it has important interactions with both triazines and ureas. Oettmeier et al. (21) found that an azido derivative of dinoseb (a dinitrophenol) acted as a photoaffinity label for a spinach thylakoid membrane polypeptide in the 40,000 D range. If this protein is not homologous to the atrazine-labeled protein, then one must conclude that the binding sites for the different classes of herbicides reach into the region of at least two proteins. It will be of interest to determine if herbicide resistance can arise from mutations in more than one thylakoid protein gene.We have initiated a study of resistance to DCMU in Chlamydomonas reinhardii with two main objectives (a) By using genetic variants, we hop...