RNA polymerase has been purified from vegetative cells of Bacillus brevis and resolved into 'core' enzyme and sigma factor. The purified enzyme is rapidly inactivated by incubation at low temperatures in the presence of 1-2 mM ATP, dATP, or NAD+, while other nucleotides at this concentration have little or no effect. Inactivation is not accompanied by the incorporation of an adenylyl or phosphoryl moiety into RNA polymerase; nevertheless, it is essentially irreversible. DNA, high concentrations of glycerol, as well as low concentrations (1 mM) of orthophosphate protect RNA polymerase from the nucleotide-dependent inactivation.A similar inactivation of RNA polymerase in the presence of ATP is observed with crude preparations from Bacillus subtilis and Bacillus polymyxa. This phenomenon may represent a novel mode of regulation of transcription that does not involve a covalent modification of RNA polymerase or its interaction with other protein factors, but rather is due to a structural transition to an inactive form induced by small molecules.The transcription of specific genes by bacterial RNA polymerases is known to be modulated by protein factors that interact either with the enzyme itself or with the DNA template (1-3). Under conditions of drastic physiological change, as upon bacteriophage infection or during sporulation, a more general control of transcription is seen that often involves the covalent modification of RNA polymerase (4, 5). Between these two extreme types of regulation lies the noncovalent modification of RNA polymerase by small molecules, such as the inhibition by peptide antibiotics during the early stages of sporulation (6). In this paper, we describe a phenomenon that may also belong in this category-although its physiological significance is still obscure-namely, the inactivation of RNA polymerase from Bacillus brevis in the presence of specific nucleotides. precipitated with ammonium sulfate (70% saturation), and redissolved in Buffer A containing 50% glycerol for storage at -20°(Fraction IV). The purification procedure is summarized in Table 1.
MATERIALS AND METHODS
Growth ofCrude preparations of RNA polymerase were obtained from sonic extracts of B. polymyxa and B. brevis by centrifugation at 100,000 X g for 1 hr and fractionation with ammonium sulfate.Enzyme Assays. RNA polymerase was assayed at 370 for 15 min in the presence of 0.1 mM [5-3H]UTP (10 Ci/mol), 1 mM (each) of ATP, GTP, and CTP, 10 mM MgCl2, 2 mM MnCl2, 10 mM 2-mercaptoethanol, bovine serum albumin (0.5 mg/ml), and DNA (0.1 mg/ml of salmon-sperm DNA unless otherwise indicated), in a final volume of 0.2 ml. The reaction was terminated by the addition of cold trichloroacetic acid (0.3 N), and the precipitate was washed with trichloroacetic acid, then with ethanol, on discs of glass-fiber filter paper (Whatman GF/C). The radioactivity was determined in a liquid scintillation spectrometer in a toluene-based scintillation fluid. 1 Unit of RNA polymerase activity is defined as the amount of enzyme that catalyzes the inc...