Research into bird habitat selection can unveil the impact of specific habitat characteristics on bird survival. However, empirical information on the environmental factor preferences and differences within the yew ecological garden for birds is still lacking. This study was conducted in a yew ecological garden located in the southern experimental area of the Meihua Mountain National Nature Reserve, Fujian Province, China. We selected three commonly occurring bird species for analysis to discern the factors influencing habitat selection and interspecific differences and the impact of habitat environmental factors. Canopy density and coverage were identified as dominant factors influencing habitat selection for the Red-billed Blue Magpie (Urocissa erythrorhyncha), Black Bulbul (Hypsipetes leucocephalus), and Orange-bellied Leafbird (Chloropsis hardwickii). The height of perching trees, average tree height, and average diameter at breast height were all important determinants for the habitat selection of Red-billed Blue Magpie and Black Bulbul. These dominant factors were consistent with logistic regression analysis results. Both one-way ANOVA and stepwise discriminant analysis revealed significant differences in habitat selection among three commonly occurring bird species. Our results provide important insights into avian habitat selection in patchy habitats, which can be used as a guideline for future conservation and habitat management.