To isolate Saccharomyces cerevisiae mutants defective in recombinational DNA repair, we constructed a strain that contains duplicated ura3 alleles that flank LEU2 and ADES genes at the ura3 locus on chromosome V. When a HO endonuclease cleavage site is located within one of the ura3 alleles, Ura+ recombination is increased over 100-fold in wild-type strains following HO induction from the GAL1,10 promoter. This strain was used to screen for mutants that exhibited reduced levels of HO-induced intrachromosomal recombination without significantly affecting the spontaneous frequency of Ura+ recombination. One of the mutations isolated through this screen was found to affect the essential gene CDC]. This mutation, cdcl-100, completely eliminated HO-induced Ura+ recombination yet maintained both spontaneous preinduced recombination levels and cell viability. cdcl-100 mutants were moderately sensitive to killing by methyl methanesulfonate and -y irradiation. The elect of the cdcl-100 mutation on recombinational double-strand break repair indicates that a recombinationally silent mechanism other than sister chromatid exchange was responsible for the efficient repair of DNA double-strand breaks.Genomic integrity is maintained through generations by the coordinated control of DNA replication and chromosome segregation with cell growth and division. An important aspect of this process is the recognition and repair of DNA lesions that arise during the course of normal cellular metabolism or from exposure to genotoxic agents in the environment. In the yeast Saccharomyces cerevisiae, toxicity of DNA double-strand breaks (DSBs) is dependent upon several factors, including ploidy (9, 15, 48), cell cycle position (6,39,49), and the genetic constitution of the cell (15, 36). Prior to DNA replication, haploid cells in the G1 phase are particularly sensitive to killing by ionizing radiation, indicating that DSBs are repaired by a DNA homology-dependent mechanism. Mutant strains defective in recombinational DNA repair processes, most notably those mediated by the RAD52 epistasis group, have a reduced threshold level of DSB tolerance (26,49). Mutations in these genes confer sensitivity to killing by physical and chemical agents that generate DSBs, such as ionizing radiation and methyl methanesulfonate (MMS). That this collection of genes also affect genetic recombination has been interpreted to indicate a role for mitotic recombination in the repair of DSBs (15,23,36,48).DSBs inhibit the cell division cycle and unless repaired represent lethal lesions. A single DSB generated enzymatically by the HO endonuclease at MA4T (40,59) Experiments in which HO-induced DSBs were introduced into the ribosomal DNA cluster or an 18-fold repeated CUP1 gene locus demonstrate that efficient repair can occur by a RAD52-independent mechanism (43). When CUPJ repeats were reduced from 18 to 3, however, the RAD52 dependency of DSB repair was restored. RAD52-independent DSB repair among tandemly repeated sequences is thought to result from the same extens...