BackgroundLoss of arm function is a common and distressing consequence of stroke. We describe the protocol for a pragmatic, multicentre randomised controlled trial to determine whether robot-assisted training improves upper limb function following stroke.Methods/designStudy design: a pragmatic, three-arm, multicentre randomised controlled trial, economic analysis and process evaluation.Setting: NHS stroke services.Participants: adults with acute or chronic first-ever stroke (1 week to 5 years post stroke) causing moderate to severe upper limb functional limitation.Randomisation groups:1. Robot-assisted training using the InMotion robotic gym system for 45 min, three times/week for 12 weeks2. Enhanced upper limb therapy for 45 min, three times/week for 12 weeks3. Usual NHS care in accordance with local clinical practiceRandomisation: individual participant randomisation stratified by centre, time since stroke, and severity of upper limb impairment.Primary outcome: upper limb function measured by the Action Research Arm Test (ARAT) at 3 months post randomisation.Secondary outcomes: upper limb impairment (Fugl-Meyer Test), activities of daily living (Barthel ADL Index), quality of life (Stroke Impact Scale, EQ-5D-5L), resource use, cost per quality-adjusted life year and adverse events, at 3 and 6 months.Blinding: outcomes are undertaken by blinded assessors.Economic analysis: micro-costing and economic evaluation of interventions compared to usual NHS care. A within-trial analysis, with an economic model will be used to extrapolate longer-term costs and outcomes.Process evaluation: semi-structured interviews with participants and professionals to seek their views and experiences of the rehabilitation that they have received or provided, and factors affecting the implementation of the trial.Sample size: allowing for 10% attrition, 720 participants provide 80% power to detect a 15% difference in successful outcome between each of the treatment pairs. Successful outcome definition: baseline ARAT 0–7 must improve by 3 or more points; baseline ARAT 8–13 improve by 4 or more points; baseline ARAT 14–19 improve by 5 or more points; baseline ARAT 20–39 improve by 6 or more points.DiscussionThe results from this trial will determine whether robot-assisted training improves upper limb function post stroke.Trial registrationISRCTN, identifier: ISRCTN69371850. Registered 4 October 2013.Electronic supplementary materialThe online version of this article (doi:10.1186/s13063-017-2083-4) contains supplementary material, which is available to authorized users.