Unlike mammals, birds, and most other fishes, winter flounder completes spermatogenesis without replacing its germ cell histones with protamines. Instead, during spermiogenesis, these fish produce a family of high molecular weight (80,000 -200,000) basic nuclear proteins (HM r BNPs) that bind to sperm chromatin containing the normal complement of histones. These large, basic proteins are built up of tandem iterations of oligopeptide repeats that contain phosphorylatable DNA-binding motifs. Although the HM r BNPs have no obvious homology to histones, protamines, or other sperm-specific chromatin proteins, we report here the isolation of a clone (2B) from a winter flounder genomic DNA library that establishes a link between the HM r BNPs and histone H1. The 2B sequence contains an open reading frame, which, when conceptually translated, encodes a 265-residue protein. At its N terminus the translation product contains numerous simple repeats that match the oligopeptides contained within the HM r BNPs. Unexpectedly, the C terminus of the putative protein shows 66% identity and 76% conservation to the histone H1 globular domain. This connection suggests that the HM r BNPs may have originated from the extended N-terminal tail region of a testis-specific, H1-like linker histone.In almost all eukaryotic cells, histones have a fundamental role in organizing and condensing DNA (1, 2). It is therefore not surprising that the sequences of the core histones (H2A, H2B, H3, and H4) are extremely well conserved and contain many basic residues. The fifth histone (H1), which may or may not sit outside the nucleosomal core (3), is the longest, most variable, and most lysine-rich member of the histone family. The structure of histone H1 can be subdivided into three domains: a variable N-terminal region of 35-40 residues with a net positive charge followed by a well conserved globular domain of 80 residues (4), which is thought to interact with both core histones and nucleosomal DNA, and a very basic C-terminal tail of ϳ90 residues, 90% of which is lysine, alanine, and proline.Most organisms possess more than one tissue-or stagespecific histone H1 variant (5, 6). For example, sperm-specific histone H1 variants (H1T) are commonly found in mammals (6), amphibians (7), and invertebrates (8, 9). H1Ts typically have a shorter C-terminal domain and tails that contain a higher proportion of positively charged residues (usually Arg) than their somatic counterparts, as well as a greater number of phosphorylation sites (6). However, the sperm-specific H1 of sea urchin (SpH1) is longer than its somatic counterpart at both ends due to N-and C-terminal extensions composed of tetrapeptide repeats (SPXB, where X is usually basic, and B is K or R) (10).This trend to increased basicity and a higher arginine content in sperm-specific histones may facilitate condensation of the DNA into the sperm nucleus. In fact, the switch from somatic to sperm chromatin can be accomplished using a variety of proteins. One strategy used by some vertebrates and many ...