Abstract. Understanding the sources and sinks of CH4 is critical to both predicting and mitigating future climate change. There are large uncertainties in the global budget of atmospheric CH4, but natural emissions are estimated to be of a similar magnitude to total anthropogenic emissions. The largest sources of uncertainty in scaling bottom-up CH4 estimates stem from limited ground-based measurements and the misalignment between drivers of CH4 fluxes and current land use classifications. To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States (US) of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and landcover. To determine the gaps in physical infrastructure for developing this network, we need to understand the representativeness of current measurements. We focus here on eddy covariance (EC) flux towers because they are essential for a bottom-up framework that bridges the gap between point-based chamber measurements and airborne or satellite platforms, informing the remote sensing and modelling communities and policy decisions, all the way to IPCC reports. Using multidimensional scaling and a cluster analysis, the US was divided into 10 clusters that were distributed across temperature and wetness gradients. We evaluated the distance to the medoid condition within each cluster for research sites with EC tower infrastructure to identify the gaps in existing infrastructure that limit our ability to constrain the contribution of US biogenic CH4 emissions to the global budget. These gaps occurred across all EC flux tower networks and independently managed sites as well as in some environmental clusters. Through our analysis using climate, land cover, and location variables, we have identified priority areas to target for research infrastructure to provide a more complete understanding of the CH4 flux potential of ecosystem types across the US.