Glycogenin is a self-glucosylating protein involved in the initiation phase of glycogen biosynthesis. A single mammalian gene had been reported to account for glycogen biogenesis in liver and muscle, the two major repositories of glycogen. We describe the characterization of novel forms of glycogenin, designated glycogenin-2 (GN-2), encoded by a second gene that is expressed preferentially in certain tissues, including liver, heart, and pancreas. Cloning of cDNAs encoding glycogenin-2 indicated the existence of multiple species, including three liver forms (GN-2␣, GN-2, and GN-2␥) generated in part by alternative splicing. Overall, GN-2 has 40 -45% identity to muscle glycogenin but is 72% identical over a 200-residue segment thought to contain the catalytic domain. GN-2 expressed in Escherichia coli or COS cells is active in self-glucosylation assays, and self-glucosylated GN-2 can be elongated by skeletal muscle glycogen synthase. Antibodies raised against GN-2 produced in E. coli recognized proteins of M r ϳ66,000 present in extracts of rat liver and in cultured H4IIEC3 hepatoma cells. In H4IIEC3 cells, most of the GN-2 was present as a free protein but some was covalently associated with glycogen fractions and was only released by treatment with ␣-amylase. H4IIEC3 cells also expressed the muscle form of glycogenin (glycogenin-1), which was attached to a chromatographically separable glycogen fraction.Glycogen, a branched polymer of glucose, is a metabolic energy reserve accumulated in many cell types (1). In mammals, the major glycogen deposits in absolute amount are those of skeletal muscle and liver. These glycogen reserves have somewhat different functions, but both pools contribute to blood glucose homeostasis. In eukaryotes, the pathway of glycogen biogenesis consists of an initiation step and a subsequent phase of bulk polysaccharide synthesis mediated by glycogen synthase and the branching enzyme (see, for example, Ref. 2).