Research Article PhalDB:A comprehensive database for molecular mining of the &lt;i&gt;Phalaenopsis&lt;/i&gt; genome, transcriptome and miRNome

Lee, C.Y.; Viswanath, K.; Huang, Jui Hsien; Lee, C.P.; Lin, Chengsen; Cheng, Ta-Chih; Chang, Bill C.H.; Chin, Shih-Wen; Chen, F.C.

doi:10.4238/gmr18051

Cited by 4 publications

(1 citation statement)

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“…Orchidstra 2.0 [ 106 ] ( http://orchidstra2.abrc.sinica.edu.tw ) is another orchid database for transcriptomics resource that includes orchid transcriptome assembly and gene annotations of 18 orchid species belonging to 12 genera across five subfamilies. Other databases like OOGB ( http://predictor.nchu.edu.tw/oogb ) and PhalDB [ 107 ] also provided quantities of sequence information about the genome, transcriptome, and miRNA data of Oncidium and Phalaenopsis , respectively. These datasets provide the capacity and platform for rapid data mining, generation, and analysis.…”

Section: Orchid Databasementioning

confidence: 99%

Advances and prospects of orchid research and industrialization

Zhang

Zhao

et al. 2022

Horticulture Research

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Orchidaceae is one of the largest, most diverse families in angiosperms with significant ecological and economical values. Orchids have long fascinated scientists by their complex life histories, exquisite floral morphology and pollination syndromes that exhibit exclusive specializations than any other plants on earth. These intrinsic factors together with human influences also make it a keystone group in biodiversity conservation. The advent of sequencing technologies and transgenic techniques represents a quantum leap in orchid research, enabling molecular approaches to be employed to resolve the historically interesting puzzles in orchid basic and applied biology. To date, 15 different orchid genomes covering four subfamilies (Apostasioideae, Vanilloideae, Epidendroideae and Orchidoideae) have been released. These genome projects have given rise to massive data that greatly empowers the studies pertaining to key innovations and evolutionary mechanisms for the breadth of orchid species. The extensive exploration of transcriptomics, comparative genomics, and recent advances in gene engineering have linked important traits of orchids with a multiplicity of gene families and their regulating networks, providing great potential for genetic enhancement and improvement. In this review, we summarize the progress and achievement in fundamental research and industrialized application of orchids with a particular focus on molecular tools, and make future prospects of orchid molecular breeding and post-genomic research, providing a comprehensive assemblage of start-of-art knowledge in orchid research and industrialization.

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Section: Orchid Databasementioning

confidence: 99%