The Tusi system was the main means of border minority rule in the Ming Dynasty, and analyzing the beginning and end of the Tusi rebellion and its pacification is an effective perspective to analyze the governance of the system. The paper builds an algorithmic criticism paradigm for the historical study of the Shizhou Rebellion in the early Ming Dynasty, proposes a framework extraction algorithm to realize the automatic acquisition of historical knowledge, identifies the consistency of the knowledge framework based on the conceptual lattice, and corrects the inconsistency by combining with the unity algorithm. After using an iterative algorithm to fuse the multi-source knowledge framework, constraints are added to the conditional random field to improve the extraction of event elements. The semantic reasoning of event features is completed by establishing a semantic knowledge association network of historical events through the association of elements. Based on the results of knowledge association, it is found that the knowledge flow between the topic pair “Tusi→Shizhouwei” is most likely to occur in the future with an association probability of 0.631. “kampong→Education” The probability of association between the theme pairs “kampong→Education”, “Shizhou→Appliance”, “Lanyu→Military”, and “Crackdown→Politics” is 0.631. The same possibility of knowledge flow in the future exists between theme pairs such as “Shizhou→Appliance”, “Lanyu→Military” and “Crackdown→Politics”, with association probabilities greater than 0.550, which suggests that the core contradiction between the Shizhou Tusi Rebellion and governance lies in the contradiction between the Tusi and the leadership rights and interests of the Shizhou Guards. The dissection of the Shi Zhou Tusi rebellion declares the profound influence of the Tusi system on the frontier governance of the Ming Dynasty and reveals the fundamental problems of local governance in the ancient Chinese Great Unification Dynasty.