Precise model personalization is a key step towards the application of cardiovascular physical models. In this manuscript, we propose to use deep learning (DL) to solve the parameter estimation problem in cardiovascular hemodynamics. Based on the convolutional neural network (CNN) and fully connected neural network (FCNN), a multi-input deep neural network (DNN) model is developed to map the nonlinear relationship between measurements and the parameters to be estimated. In this model, two separate network structures are designed to extract the features of two types of measurement data, including pressure waveforms and a vector composed of heart rate (HR) and pulse transit time (PTT), and a shared structure is used to extract their combined dependencies on the parameters.Besides, we try to use the transfer learning (TL) technology to further strengthen the personalized characteristics of a trained-well network. For assessing the proposed method, we conducted the parameter estimation using synthetic data and in vitro data respectively, and in the test with synthetic data, we evaluated the performance of the TL algorithm through two individuals with different characteristics. A series of estimation results show that the estimated parameters are in good agreement with the true values. Furthermore, it is also found that the estimation accuracy can be significantly improved by a multicycle combination strategy. Therefore, we think that the proposed method has the potential to be used for parameter estimation in cardiovascular hemodynamics, which can provide an immediate, accurate, and sustainable personalization process, and deserves more attention in the future.