Phase-variable lipoproteins are commonly found in Mycoplasma species. Mycoplasma pulmonis contains a family of extensively studied phase-and size-variable lipoproteins encoded by the vsa locus. The Vsa surface proteins vary at a high frequency, the in vivo significance of which has yet to be determined. We investigated the role of Vsa phase variation in respect to tissue tropism and avoidance of the immune system in the mouse host. Mycoplasmas were cultured 3, 14, and 21 days postinoculation from the nose, lung, trachea, liver, and spleen of experimentally infected C57BL/6 (wild-type), C57BL/6-RAG-1 ؊/؊ (RAG ؊/؊ ), and C57BL/6-inducible nitric oxide synthase (iNOS) ؊/؊ (iNOS ؊/؊ ) mice. In wild-type and iNOS ؊/؊ mice, a large number of Vsa variants were seen by 21 days postinoculation. In contrast, little Vsa variation occurred in all tissues of RAG ؊/؊ mice. Analysis of isolates from 14 days postinoculation revealed less variation of the Vsa proteins in iNOS ؊/؊ mice than in the wild type. Western blot analysis of isolates from each strain of mouse demonstrated that Vsa phase variation occurred independently of size variation, indicating no obvious selection pressure for size variants. Additionally, these experiments provided no evidence that mycoplasmas producing particular Vsa proteins adhered only to specific tissues. The data strongly indicate that Vsa phase variation is a mechanism for avoidance of the immune system with no obvious contribution to tissue tropism.Phase variation is a common mechanism thought to aid in microbial survival by allowing for the presence of diverse subpopulations that can quickly respond to changing environmental conditions (9, 13). Among the better-studied models of phase variation is the pilin protein of Neisseria gonorrhoeae, where phase variation affects competence for DNA transformation (24), adherence to epithelial cells (17, 23), and avoidance of the host immune system (2). Mycoplasmas possess an abundance of phase-variable proteins, especially surface-exposed lipoproteins (20,30,31). The in vivo significance of phase-variable lipoproteins from Mycoplasma species has not yet been established but may function in gene transfer, tissue tropism, or avoidance of the host immune system like that of pilin variation of N. gonorrhoeae.Mycoplasma pulmonis, the causative agent of murine respiratory mycoplasmosis, produces a family of phase-and sizevariable surface-bound lipoproteins encoded by the vsa (for variable surface antigen) genes. The amino terminus of the Vsa proteins is composed of a conserved domain of 242 amino acids, and the carboxy terminus is a variable domain usually consisting of numerous tandem repeats (25). Each cell will express the vsa gene that is associated with the single vsa expression site. This site contains the vsa promoter and the first 714 nucleotides of the coding region. Different vsa genes can become expressed by site-specific DNA inversions, catalyzed by the HvsR recombinase (29) at a 34-bp site termed the vsa recombination site (vrs box) (1). The CT...